Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG566_RS23610 Genome accession   NZ_CP108352
Coordinates   5049250..5050251 (+) Length   333 a.a.
NCBI ID   WP_329119508.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01353     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5044250..5055251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG566_RS23585 (OG566_23635) - 5044400..5045917 (+) 1518 WP_329119497.1 MFS transporter -
  OG566_RS23590 (OG566_23640) - 5045949..5046452 (-) 504 WP_329119499.1 MarR family transcriptional regulator -
  OG566_RS23595 (OG566_23645) - 5046622..5047416 (+) 795 WP_329119501.1 class III extradiol ring-cleavage dioxygenase -
  OG566_RS23600 (OG566_23650) - 5047469..5048476 (-) 1008 WP_329119505.1 questin oxidase family protein -
  OG566_RS23605 (OG566_23655) - 5048562..5049101 (-) 540 WP_329119506.1 N-acetyltransferase family protein -
  OG566_RS23610 (OG566_23660) rpoS 5049250..5050251 (+) 1002 WP_329119508.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG566_RS23615 (OG566_23665) - 5050583..5051545 (-) 963 WP_329119510.1 YafY family protein -
  OG566_RS23620 (OG566_23670) - 5051608..5053161 (+) 1554 WP_329119511.1 MFS transporter -
  OG566_RS23625 (OG566_23675) - 5053237..5053842 (+) 606 Protein_4674 PTS fructose transporter subunit IIC -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37268.03 Da        Isoelectric Point: 5.0598

>NTDB_id=659129 OG566_RS23610 WP_329119508.1 5049250..5050251(+) (rpoS) [Streptomyces sp. NBC_01353]
MATRAVARRSSAKSGSSTRASGVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEAESEAG
GASREELEALYEAGERAKDLFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELETKPERVVDVLDWARDPVSLNMSVDDQGETQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIDKLDHRTASIIRMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKMARDTGFDAVA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=659129 OG566_RS23610 WP_329119508.1 5049250..5050251(+) (rpoS) [Streptomyces sp. NBC_01353]
ATGGCAACCCGTGCCGTCGCCCGTCGTTCGTCCGCCAAGAGCGGGAGCAGCACGCGGGCCAGCGGAGTTCGCGCCGTGGG
CGGGGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACGCCCCTGCTCGACGCCGCCAAGG
AGGTCGAGCTCTCCCAGACGATCGAGGCGGGTGTGTACGCCCGGCAGATCCTCGACGGAGAAGCAGAAAGCGAGGCGGGC
GGTGCGTCCCGCGAGGAGCTCGAAGCGCTCTACGAGGCGGGTGAGCGTGCCAAGGACCTCTTCATCAAGTCGAATCTGCG
ACTGGTCGTCGCGGTCGCGCGACGCTATCCGCGCAGCGGGCTGCCGCTGCTCGACCTGATCCAGGAGGGGAACGCGGGCC
TGGTCCGCGCGGTCGAGAAGTTCGACTACGCGAAGGGCTTCAAGTTCTCGACGTACGCCACATGGTGGATCCGCCAGGCC
ATCACGCGGTCCATAGCCGACCAGTCGCGCACGATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTCGGGCGGATCCGTCG
TGTGCAGCGCGAGTTCAACCGGGAGCACGGCCGCGAGCCGGAGCCGGCGGAGATCGCGGCCGAGCTGGAGACCAAGCCCG
AGCGGGTCGTCGACGTCCTCGACTGGGCGCGGGACCCGGTCTCGCTGAACATGTCGGTGGACGACCAGGGCGAGACGCAG
TTCGGCGACCTGCTGGAGGACACCTCGGCGGTGTCGCCCGAGCAGTCGGTGCTGACGCTGCTGCGCAGTGAGGAGCTCGA
CGACCTGATCGACAAGCTCGACCACCGCACGGCGTCGATCATCCGGATGCGGTACGGAATCGAGGACGGCCGGGAGCGGA
CGCTGACCGAGGTCGGCAAGGAGCACGGCCTGACGCGGGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAACTG
AAGAAGATGGCCCGCGACACGGGCTTCGACGCGGTGGCCTAG

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 region 3 (Sigma70_r3)

(180-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

90.09

0.36