Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG566_RS11055 Genome accession   NZ_CP108352
Coordinates   2377583..2378374 (+) Length   263 a.a.
NCBI ID   WP_329115078.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01353     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2372583..2383374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG566_RS11040 (OG566_11085) - 2372931..2373464 (+) 534 WP_329125319.1 TerD family protein -
  OG566_RS11045 (OG566_11090) - 2373544..2376432 (-) 2889 WP_329115074.1 vitamin B12-dependent ribonucleotide reductase -
  OG566_RS11050 (OG566_11095) nrdR 2376591..2377103 (-) 513 WP_329115076.1 transcriptional regulator NrdR -
  OG566_RS11055 (OG566_11100) dinR/lexA 2377583..2378374 (+) 792 WP_329115078.1 transcriptional repressor LexA Regulator
  OG566_RS11060 (OG566_11105) - 2378483..2380456 (-) 1974 WP_329115079.1 ATP-dependent DNA helicase -
  OG566_RS11065 (OG566_11110) - 2380494..2382305 (-) 1812 WP_329115082.1 IucA/IucC family siderophore biosynthesis protein -
  OG566_RS11070 (OG566_11115) - 2382367..2383092 (-) 726 WP_329115083.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28411.14 Da        Isoelectric Point: 6.9852

>NTDB_id=659093 OG566_RS11055 WP_329115078.1 2377583..2378374(+) (dinR/lexA) [Streptomyces sp. NBC_01353]
MTTTADSATITAQDRSQGRLEPVHAMNDAAMNGDGEPGRPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=659093 OG566_RS11055 WP_329115078.1 2377583..2378374(+) (dinR/lexA) [Streptomyces sp. NBC_01353]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCATGAACGGGGACGGGGAGCCTGGCCGACCTACGCGCTCGTTGCCCGGGCGACCTCCAGGCATCAGGGCGG
ACAGCTCCGGCCTCACGGACCGCCAGCGGAGGGTCATCGAGGTCATCCGGGACTCGGTCCAGCGGCGCGGCTACCCGCCG
TCGATGCGAGAGATCGGCCAGGCGGTCGGCCTCTCCAGCACCTCCTCCGTGGCCCACCAGCTGATGGCCTTGGAGCGCAA
GGGCTTCCTGCGCCGGGACCCGCACCGGCCCCGGGCGTACGAAGTGCGCGGCTCCGACCAGCCCAGCACGCAGCCGACGG
ACACCACCGGCAAGCCCGCCGCGTCGTACGTGCCGCTCGTCGGCCGGATCGCCGCAGGTGGCCCGATCCTCGCCGAGGAG
TCCGTCGAGGACGTCTTCCCGCTCCCCCGGCAGCTGGTCGGCGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGAGACTC
GATGATCGAGGCCGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCGTGG
CGGCCATGCTCGACGGAGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGGCATGTCTGGCTGCTGCCGCACAACGCG
GCGTACCAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCGGTACTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(145-257)

LexA DNA binding domain (LexA_DNA_bind)

(56-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.608

0.373