Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG566_RS08450 Genome accession   NZ_CP108352
Coordinates   1803468..1804139 (-) Length   223 a.a.
NCBI ID   WP_329114130.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01353     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798468..1809139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG566_RS08425 (OG566_08455) - 1798511..1799530 (-) 1020 WP_329114121.1 sugar ABC transporter substrate-binding protein -
  OG566_RS08430 (OG566_08460) - 1799618..1800337 (-) 720 WP_329125279.1 GntR family transcriptional regulator -
  OG566_RS08435 (OG566_08465) - 1800482..1801483 (+) 1002 WP_329114123.1 Gfo/Idh/MocA family oxidoreductase -
  OG566_RS08440 (OG566_08470) - 1801847..1802275 (-) 429 WP_329114125.1 PaaI family thioesterase -
  OG566_RS08445 (OG566_08475) - 1802280..1803458 (-) 1179 WP_329114128.1 cytochrome P450 -
  OG566_RS08450 (OG566_08480) vraR 1803468..1804139 (-) 672 WP_329114130.1 response regulator transcription factor Regulator
  OG566_RS08455 (OG566_08485) - 1804136..1805353 (-) 1218 WP_329114132.1 histidine kinase -
  OG566_RS08460 (OG566_08490) - 1805500..1805718 (+) 219 WP_329114134.1 hypothetical protein -
  OG566_RS08465 (OG566_08495) - 1805829..1806515 (+) 687 WP_329114136.1 hypothetical protein -
  OG566_RS08470 (OG566_08500) - 1806569..1807405 (+) 837 WP_329114138.1 hypothetical protein -
  OG566_RS08475 (OG566_08505) - 1807463..1807828 (-) 366 WP_329114140.1 hypothetical protein -
  OG566_RS08480 (OG566_08510) - 1807840..1808766 (-) 927 WP_329114142.1 DMT family transporter -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23686.22 Da        Isoelectric Point: 5.3151

>NTDB_id=659085 OG566_RS08450 WP_329114130.1 1803468..1804139(-) (vraR) [Streptomyces sp. NBC_01353]
MTIRLLVVDDDPLVRAGLTFMLGGADDIEIVGEGTDGRDVPDLVARLAPDVVLMDIRMPHVDGLTATELLRARPDAPEVV
VLTTFHADEQVLRALRAGAAGFVLKDTPPAEIVAAVRRVASGDPVLSPAVTRQLMSHVTGRPEQPRSATAAGRIAELAQR
EREVAVSVGRGHSNAEIAAALYMSVPTVKTHVSRILAKLGLNNRVQIALLVHDAGLLDENDTA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=659085 OG566_RS08450 WP_329114130.1 1803468..1804139(-) (vraR) [Streptomyces sp. NBC_01353]
ATGACCATCCGTCTGCTCGTCGTCGACGACGACCCCCTGGTCCGCGCCGGCCTCACCTTCATGCTCGGCGGCGCCGACGA
CATCGAGATCGTCGGCGAGGGCACCGACGGCCGGGACGTACCCGACCTCGTCGCCCGCCTCGCCCCGGACGTCGTCCTCA
TGGACATCCGGATGCCGCACGTCGACGGTCTGACCGCCACCGAACTGCTGCGCGCCCGCCCCGACGCCCCCGAGGTCGTG
GTCCTCACCACCTTCCACGCCGACGAGCAGGTGCTGCGCGCCCTGCGCGCGGGCGCGGCCGGATTCGTCCTCAAGGACAC
TCCGCCCGCCGAGATCGTCGCCGCCGTGCGTCGCGTCGCGTCCGGCGACCCCGTGCTCTCCCCGGCCGTCACCCGCCAGC
TGATGAGTCACGTCACGGGCCGGCCGGAGCAGCCGAGGAGCGCGACCGCGGCGGGCAGGATCGCCGAACTCGCCCAGCGC
GAACGCGAGGTCGCCGTCTCCGTCGGCCGCGGGCACTCCAACGCCGAGATCGCCGCCGCCCTCTACATGAGCGTGCCGAC
CGTCAAGACCCATGTCTCACGGATTCTCGCCAAACTCGGCCTCAACAACCGTGTCCAGATCGCGCTTCTCGTCCACGACG
CCGGCCTCCTCGACGAAAACGACACCGCCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-210)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.986

98.206

0.363