Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG548_RS30150 Genome accession   NZ_CP108350
Coordinates   6800052..6801785 (-) Length   577 a.a.
NCBI ID   WP_266464318.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01356     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6795052..6806785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG548_RS30140 (OG548_30135) - 6796537..6797853 (+) 1317 WP_266462861.1 RNA polymerase sigma factor -
  OG548_RS30145 (OG548_30140) rcrQ 6798124..6800052 (-) 1929 WP_329547737.1 ABC transporter ATP-binding protein Regulator
  OG548_RS30150 (OG548_30145) rcrP 6800052..6801785 (-) 1734 WP_266464318.1 ABC transporter ATP-binding protein Regulator
  OG548_RS30155 (OG548_30150) - 6801936..6803390 (-) 1455 WP_329547738.1 FGGY family carbohydrate kinase -
  OG548_RS30160 (OG548_30155) - 6803477..6803782 (-) 306 WP_266462868.1 YtxH domain-containing protein -
  OG548_RS30180 (OG548_30175) - 6804654..6805058 (-) 405 WP_329547739.1 NUDIX domain-containing protein -
  OG548_RS30185 (OG548_30180) - 6805158..6805433 (-) 276 WP_329547740.1 hypothetical protein -
  OG548_RS30190 (OG548_30185) - 6805951..6806178 (-) 228 WP_329547741.1 hypothetical protein -
  OG548_RS30195 (OG548_30190) - 6806410..6806661 (+) 252 WP_329547742.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62520.75 Da        Isoelectric Point: 6.5101

>NTDB_id=659050 OG548_RS30150 WP_266464318.1 6800052..6801785(-) (rcrP) [Streptomyces sp. NBC_01356]
MLIRLLRTYLRPYKKPIALLVLLQLLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIAISLAQVVCNIGAVYYGA
RTASAVGRDIRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGLGVTLIIRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRKANADLTEVSLGTGRYLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PTAPVVELRRHGHLEIRGGGFRYPGAEEPVLTAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPRLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYKTDAMLRAALAAETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659050 OG548_RS30150 WP_266464318.1 6800052..6801785(-) (rcrP) [Streptomyces sp. NBC_01356]
GTGCTCATACGACTACTTCGTACGTACCTCCGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTCAACGCGCACATCATTGACAACGGTGTCGTGAAGGGCGACACGGGCTACA
TCCTGTCCTTCGGCGCAGTCATGATCGCGATCTCGCTGGCGCAGGTCGTCTGCAACATCGGCGCCGTCTACTACGGCGCC
CGTACGGCGTCGGCGGTCGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTCCAGTCCTTCTCCGCGCGCGAGGTCGG
CCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCCGTGGTGCCGGTACTCGGCCTCGGTGTGACCCTGATCATCCGGCGGCTGCGGCCGCTGTTCCGCTCCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCCGCGCCTTCGTACGGGACG
ACTACGAGAAGGAGCGCTTCCGGAAGGCGAACGCCGATCTGACCGAGGTGTCCCTGGGCACCGGGCGGTACCTGGCACTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTCTCCTCGATCGCCGTCGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
GGGCATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGACACCGACAGCAGTGTGGTGCCG
CCGACCGCACCCGTCGTGGAGCTGCGGCGCCACGGCCACCTGGAGATCCGGGGCGGCGGGTTCCGTTACCCGGGTGCCGA
GGAGCCGGTGCTGACGGCCGTCGACCTGGTGGCACGGCCGGGTGAGACGACCGCCGTGATCGGGTCCACGGGCAGTGGCA
AGTCGACGCTTCTCGGGCTCGTCCCCCGGCTGTTCGACGCCACCGACGGGGAGGTGCTCGTCGACGGCGTGGACGTGGCG
ACCATCGAGCCGAGACTCCTTGCCAAGACGGTCGGACTCGTCCCGCAGAAGCCGTATCTCTTCGCGGGCACGGTGGCTAC
GAACCTGCGGTACGGCAACCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGGGCCTGGAGAACGGCCTCGACTCCCCCATCGCACAGGGCGGCACGAATGTGTCCGGTGGTCAGCGGCAGCGACTC
GCGATCGCCCGCACCCTCGTACAACGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACAAGACCGA
CGCCATGCTCCGCGCGGCGCTCGCCGCGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTAGGCACCGGGCGGCACCACGAACTGATGGCGGGCAAC
GAGACATACCGGGAGATCGTCCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.034

100

0.404