Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG548_RS30145 Genome accession   NZ_CP108350
Coordinates   6798124..6800052 (-) Length   642 a.a.
NCBI ID   WP_329547737.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01356     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6793124..6805052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG548_RS30135 (OG548_30130) dnaG 6794393..6796300 (+) 1908 WP_326723274.1 DNA primase -
  OG548_RS30140 (OG548_30135) - 6796537..6797853 (+) 1317 WP_266462861.1 RNA polymerase sigma factor -
  OG548_RS30145 (OG548_30140) rcrQ 6798124..6800052 (-) 1929 WP_329547737.1 ABC transporter ATP-binding protein Regulator
  OG548_RS30150 (OG548_30145) rcrP 6800052..6801785 (-) 1734 WP_266464318.1 ABC transporter ATP-binding protein Regulator
  OG548_RS30155 (OG548_30150) - 6801936..6803390 (-) 1455 WP_329547738.1 FGGY family carbohydrate kinase -
  OG548_RS30160 (OG548_30155) - 6803477..6803782 (-) 306 WP_266462868.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69365.65 Da        Isoelectric Point: 5.3036

>NTDB_id=659049 OG548_RS30145 WP_329547737.1 6798124..6800052(-) (rcrQ) [Streptomyces sp. NBC_01356]
MAGPMGRMMAGGGPDQRSMDFKGSGKRLLSQFKPERGTMYAMLSLGVVSVALSVLGPKILGRATDLVFAGIIGREMPAGQ
TKAEALEAMRARGDGGTADMLSGTDFTPGKGIDFGAVGNVLLLALCAFVVAGVLMAVSTRLSNRAINMTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALVTVPLSFFIATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHNLVKVFGRQEESAAQFAEQNEQLYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPALRPDELRGRVALE
NVSFRYDPDKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAAMSRDELRDGIGMVLQDT
WLFGGTIAENIAYGSSRDVTRGEIEEASRAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADAILVMENGSIVEQGAHAELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=659049 OG548_RS30145 WP_329547737.1 6798124..6800052(-) (rcrQ) [Streptomyces sp. NBC_01356]
ATGGCCGGGCCTATGGGGCGGATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGATGGATTTCAAGGGGTCGGGCAAACG
GCTCCTCTCACAGTTCAAGCCCGAGCGCGGCACGATGTACGCGATGCTCTCCCTCGGTGTGGTCAGCGTGGCGCTGTCCG
TGCTGGGCCCGAAGATCCTGGGCAGGGCGACCGACCTGGTCTTCGCCGGGATCATCGGACGGGAGATGCCCGCCGGCCAG
ACGAAGGCCGAGGCCCTCGAGGCGATGCGGGCACGCGGCGACGGCGGCACGGCCGACATGCTCTCGGGTACGGACTTCAC
TCCGGGCAAGGGCATCGATTTCGGCGCCGTCGGGAACGTACTGCTGCTCGCGCTCTGTGCGTTCGTGGTGGCCGGCGTGC
TGATGGCGGTGTCCACCCGGCTCTCGAACCGGGCGATCAACATGACCGTCTACCGGATGCGTGAGGACCTGCAGGCCAAG
CTGTCACGCCTGCCGCTGTCCTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTGGTCAACTCCCTCCTCACCATCGTGGGCGTGCTCGCGATGATGT
TCTGGGTCTCACCGCTCCTCGCCCTGGTGGCGCTGGTCACCGTGCCGCTGTCCTTCTTCATCGCCACGCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTCCAGCAGTGGCGGACCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGCAGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCC
GTGGTGGGCGGGCTGCGGGTCGCGTCCGGGTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTGACCCAGGTCGCCTCCATGGCGAACCTCGTGCAGTCGGGCGTGGCCTCCGCCGAGCGGATCTTCGAAC
TCCTCGACGCGGACGAGCAGGAGGCCGATCCGGTTCCGGCGCTCCGTCCCGACGAGCTGCGGGGGCGGGTGGCGCTGGAG
AACGTGTCCTTCCGGTACGACCCCGACAAGCCGCTCATCGAGGATCTGTCGCTGAAGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGCCCTACGGGCGCCGGCAAGACCACGCTGGTCAACCTCCTCATGCGGTTCTACGAGGTCACCGGGGGGCGGA
TCACTCTCGACGGGGTCGACATCGCCGCCATGTCCCGGGACGAACTCCGGGACGGCATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGGACGATCGCGGAGAACATCGCGTACGGGTCCTCGCGGGACGTCACCCGGGGGGAGATCGAGGAAGC
CTCGCGGGCCGCCCACGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACACCGTCATCGACGACGAGGGGACGG
GGGTGAGCGCGGGTGAGAAGCAGCTCATCACCATCGCTCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTCCTTGACGAG
GCGACGTCGTCCGTCGACACCCGGACGGAGGTCCTGATCCAGAAGGCGATGGCGAAGCTTGCGCACGGGCGTACGTCGTT
CGTGATCGCGCATCGGCTGTCGACGATCCGGGATGCGGACGCCATCCTCGTGATGGAGAACGGGTCGATCGTGGAACAGG
GCGCGCACGCGGAGCTGCTTGCCGCGGACGGGGCGTACGCGCGCCTGTACAAGGCCCAGTTCGCGCAGGCGGTGGCTGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(44-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.097

96.573

0.407