Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7R08_RS17130 Genome accession   NZ_AP022095
Coordinates   3543196..3543801 (-) Length   201 a.a.
NCBI ID   WP_108429870.1    Uniprot ID   -
Organism   Escherichia coli strain WP4-S18-ESBL-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3538196..3548801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R08_RS17110 (WP4S18E08_33370) aes 3538233..3539192 (+) 960 WP_000801849.1 acetyl esterase -
  H7R08_RS17115 (WP4S18E08_33380) hemH 3539189..3540151 (-) 963 WP_001250117.1 ferrochelatase -
  H7R08_RS17120 (WP4S18E08_33390) adk 3540387..3541031 (-) 645 WP_001220233.1 adenylate kinase -
  H7R08_RS17125 (WP4S18E08_33400) htpG 3541212..3543086 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  H7R08_RS17130 (WP4S18E08_33410) recR 3543196..3543801 (-) 606 WP_108429870.1 recombination mediator RecR Machinery gene
  H7R08_RS17135 (WP4S18E08_33420) ybaB 3543801..3544130 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  H7R08_RS17140 (WP4S18E08_33430) dnaX 3544183..3546114 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  H7R08_RS17145 (WP4S18E08_33440) apt 3546243..3546794 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  H7R08_RS17150 (WP4S18E08_33450) ybaN 3546947..3547324 (-) 378 WP_001188905.1 DUF454 family protein -
  H7R08_RS17155 (WP4S18E08_33460) priC 3547394..3547921 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  H7R08_RS17160 (WP4S18E08_33470) rsmS 3547935..3548096 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21989.03 Da        Isoelectric Point: 4.7763

>NTDB_id=65901 H7R08_RS17130 WP_108429870.1 3543196..3543801(-) (recR) [Escherichia coli strain WP4-S18-ESBL-08]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGYCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=65901 H7R08_RS17130 WP_108429870.1 3543196..3543801(-) (recR) [Escherichia coli strain WP4-S18-ESBL-08]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCTACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.005

0.448
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448

Multiple sequence alignment