Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA58_RS24505 Genome accession   NZ_CP108312
Coordinates   5448964..5450697 (-) Length   577 a.a.
NCBI ID   WP_405485146.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00009     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5443964..5455697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA58_RS24495 (OHA58_24520) - 5445562..5446947 (+) 1386 WP_405481394.1 sigma-70 family RNA polymerase sigma factor -
  OHA58_RS24500 (OHA58_24525) rcrQ 5447036..5448964 (-) 1929 WP_405481395.1 ABC transporter ATP-binding protein Regulator
  OHA58_RS24505 (OHA58_24530) rcrP 5448964..5450697 (-) 1734 WP_405485146.1 ABC transporter ATP-binding protein Regulator
  OHA58_RS24510 (OHA58_24535) - 5450833..5452272 (-) 1440 WP_405481397.1 FGGY family carbohydrate kinase -
  OHA58_RS24515 (OHA58_24540) - 5452358..5452666 (-) 309 WP_405481399.1 YtxH domain-containing protein -
  OHA58_RS24535 (OHA58_24560) - 5454062..5454628 (+) 567 WP_405481400.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62669.71 Da        Isoelectric Point: 5.7177

>NTDB_id=658766 OHA58_RS24505 WP_405485146.1 5448964..5450697(-) (rcrP) [Streptomyces sp. NBC_00009]
MLIRLLRTYLGPYKKPIGVLVLLQFLQTCASLYLPTLNADIIDNGVVKGDTGYILTFGAIMIAITVVQMVCNIGAVFYGA
RTASALGRDLRASVFDRVQSFSAREMGQFGAPSLITRTTNDVQQVQMLTLMTFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFREANADLTEVSLGTGKLLAL
MFPIVMTVVNISSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLATESSVVP
PSSPVRELRSHGHLEIRDAGFRYPGAEEPVLKAIQVTARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVNGVDVR
TIEPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVEKLENGLDSPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGHETSEATVVIVAQRVSTIRDADRIVVLDEGHVVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=658766 OHA58_RS24505 WP_405485146.1 5448964..5450697(-) (rcrP) [Streptomyces sp. NBC_00009]
GTGCTCATACGACTCCTGCGGACCTACCTCGGTCCGTACAAGAAACCCATCGGCGTGCTGGTGCTCCTGCAGTTCCTGCA
GACCTGCGCCTCGCTCTATCTGCCCACCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGACGTTCGGCGCCATCATGATCGCGATCACCGTGGTCCAGATGGTCTGCAACATCGGCGCCGTGTTCTACGGCGCC
CGCACCGCGTCCGCGCTCGGACGGGACCTCCGGGCCTCCGTGTTCGACCGCGTGCAGTCCTTCTCTGCGCGCGAGATGGG
CCAGTTCGGGGCGCCGTCCCTGATCACCCGCACGACGAACGACGTGCAACAGGTCCAGATGCTCACGCTCATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTGGGCCAGGACGTGCCCCTGTCGGGCGTC
CTGCTCGCCGTGGTCCCGGTCCTCGGGATCAGCGTCAGCCTGATCGTGCGCCGCCTGCGGCCGCTGTTCCGCACCATGCA
GGTACGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
ACTACGAGAAGGAGCGCTTCCGCGAGGCCAACGCCGATCTGACCGAGGTCTCCCTCGGCACCGGCAAGCTCCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACATCTCATCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGAGCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGCCACCGAGTCCAGCGTCGTGCCG
CCGTCCTCGCCGGTGCGGGAGCTGCGCAGCCACGGCCACCTGGAGATCCGGGACGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCCGTACTCAAGGCCATCCAGGTCACCGCGCGCCCCGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTCCTCGGCCTGGTGCCGCGCCTGTTCGACGCGACCGACGGCGAGGTCCTGGTGAACGGCGTCGACGTGCGC
ACCATCGAGCCGGCGCTCCTCGCCAGGACCGTCGGGCTCGTGCCGCAGAAGCCGTACCTCTTCGCGGGGACGGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCGACCGACGAAGAGCTGTGGCACGCCCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGGAGAAGCTGGAGAACGGGCTCGACTCCCCGATCTCGCAGGGCGGCACCAACGTGTCCGGCGGTCAGCGACAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCCGCGCTGCGGGCCGCGCTGGGTCACGAGACCTCCGAGGCGACCGTCGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GCGACGCGGACCGCATCGTGGTCCTCGACGAGGGCCATGTCGTGGGCACGGGCACCCATCACGAGCTGATGGACGGCAAT
GAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.179

97.054

0.39