Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA58_RS24500 Genome accession   NZ_CP108312
Coordinates   5447036..5448964 (-) Length   642 a.a.
NCBI ID   WP_405481395.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00009     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5442036..5453964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA58_RS24485 (OHA58_24510) - 5442192..5443466 (+) 1275 WP_405481392.1 NAD(P)/FAD-dependent oxidoreductase -
  OHA58_RS24490 (OHA58_24515) dnaG 5443501..5445399 (+) 1899 WP_405481393.1 DNA primase -
  OHA58_RS24495 (OHA58_24520) - 5445562..5446947 (+) 1386 WP_405481394.1 sigma-70 family RNA polymerase sigma factor -
  OHA58_RS24500 (OHA58_24525) rcrQ 5447036..5448964 (-) 1929 WP_405481395.1 ABC transporter ATP-binding protein Regulator
  OHA58_RS24505 (OHA58_24530) rcrP 5448964..5450697 (-) 1734 WP_405485146.1 ABC transporter ATP-binding protein Regulator
  OHA58_RS24510 (OHA58_24535) - 5450833..5452272 (-) 1440 WP_405481397.1 FGGY family carbohydrate kinase -
  OHA58_RS24515 (OHA58_24540) - 5452358..5452666 (-) 309 WP_405481399.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69270.64 Da        Isoelectric Point: 5.3154

>NTDB_id=658765 OHA58_RS24500 WP_405481395.1 5447036..5448964(-) (rcrQ) [Streptomyces sp. NBC_00009]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLIRQFKPEKTTMYAMVACAVLSVGLSVLGPKILGRATDLVFAGIIGREMPAGS
SKAQVIEGMRAKGDSGVADMLSGIDFTPGQGIDFGAVGSVLGIALCTFLGAGLLMAVATRLSNRALNKTVFRMREDIQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQTMGQLINSLLTIIGVLVMMFWISPLLALVALVTVPLSFLIATRVGK
RSQPQFVQQWKTTGKLNAHIEEMYTGHNLVKVFGRQEESAKAFAEQNDALYEAGFKAQFNSGMMQPLMFFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPGEKPDLLRGLVEFE
NVSFRYEQDKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDVAKMSRDELRSGIGMVLQDT
WLFGGTIADNIAYGAAKDVTREQIEEAARAAHADRFIRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHDALRAAGGAYERLYEAQFAQAVVE
VE

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=658765 OHA58_RS24500 WP_405481395.1 5447036..5448964(-) (rcrQ) [Streptomyces sp. NBC_00009]
ATGGCGGGGCCAGGCGGGCGGATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGGCTCGGGCAAGCG
GCTCATCAGGCAGTTCAAGCCCGAGAAGACGACGATGTACGCGATGGTCGCGTGCGCCGTCCTGAGTGTGGGCCTGTCGG
TGCTGGGCCCGAAGATCCTGGGCCGGGCGACCGACCTGGTCTTCGCGGGCATCATCGGGCGTGAGATGCCCGCCGGGAGC
AGCAAGGCGCAGGTCATCGAGGGGATGCGGGCCAAGGGTGACTCCGGGGTCGCCGACATGCTCTCCGGGATCGACTTCAC
GCCCGGCCAGGGCATCGACTTCGGGGCCGTGGGCTCCGTGCTCGGGATCGCCCTGTGTACGTTCCTGGGGGCCGGGCTGC
TGATGGCCGTGGCGACGCGGCTGTCCAACCGGGCGCTCAACAAGACCGTCTTCCGGATGCGCGAGGACATCCAGGCGAAG
CTGTCGCGCCTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTCACCATCATCGGCGTGCTGGTGATGATGT
TCTGGATCTCGCCGCTGCTCGCGCTGGTGGCGCTGGTGACGGTGCCGCTGTCGTTCCTGATCGCGACGCGGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTCTTCGGGCGTCAGGAGGAGTCGGCGAAGGCGTTCGCCGAGCAGAACGACGCGCTCTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATGATGCAGCCGCTGATGTTCTTCGTGTCGAACCTGAACTATGTGCTGGTCGCC
GTGGTGGGTGGCCTGCGGGTCGCCTCGGGTTCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCCATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGACGAACAGGAGGCCGACCCGGTGCCGGGCGAGAAGCCCGATCTGCTGCGCGGGCTCGTCGAGTTCGAG
AACGTGTCCTTCCGCTACGAGCAGGACAAGCCGCTCATCGAGGACCTGTCGCTCGCCGTGGAGCCGGGGCACACCGTCGC
CATCGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAATCTGCTGCTCCGCTTCTACGAGGTCACCGGCGGGCGCA
TCACCCTCGACGGGGTCGACGTGGCGAAGATGTCGCGCGACGAACTCCGTTCCGGGATCGGCATGGTGCTCCAGGACACG
TGGCTGTTCGGCGGCACGATCGCGGACAACATCGCGTACGGCGCGGCGAAGGACGTCACCCGGGAGCAGATCGAGGAGGC
GGCGCGGGCCGCCCACGCGGACCGGTTCATCCGGACGCTGCCCGAGGGCTACGACACCGTGATCGACGACGAGGGGTCGG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGCGCGTTCCTTTCGGACCCGGTGATACTCGTCCTCGACGAG
GCGACCTCCTCCGTCGATACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCCCGGCTCGCGCATGGGCGTACGTCGTT
CGTGATCGCGCATCGGCTCTCCACGATTCGGGATGCCGACACGATTCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGG
GCACGCATGACGCGTTGCGCGCCGCGGGTGGGGCGTATGAGCGGTTGTACGAGGCGCAGTTCGCGCAGGCCGTGGTTGAG
GTGGAGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.1

96.262

0.396