Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OHA58_RS17745 Genome accession   NZ_CP108312
Coordinates   3933445..3934569 (-) Length   374 a.a.
NCBI ID   WP_405479809.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3928445..3939569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA58_RS17735 (OHA58_17765) gyrB 3930537..3932630 (-) 2094 WP_405479806.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OHA58_RS17740 (OHA58_17770) - 3932906..3933448 (-) 543 WP_326712088.1 DciA family protein -
  OHA58_RS17745 (OHA58_17775) recF 3933445..3934569 (-) 1125 WP_405479809.1 DNA replication/repair protein RecF Machinery gene
  OHA58_RS17750 (OHA58_17780) gnd 3934673..3935548 (-) 876 WP_405479811.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OHA58_RS17755 (OHA58_17785) dnaN 3935726..3936856 (-) 1131 WP_116512073.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40984.66 Da        Isoelectric Point: 6.7129

>NTDB_id=658752 OHA58_RS17745 WP_405479809.1 3933445..3934569(-) (recF) [Streptomyces sp. NBC_00009]
MHVTHLSLADFRSYARVEVPLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARVGAELLAQRFDLIATLQPLADKAYEQLAPGGGPLALEYKPSSPEIDG
HAREELYEQLMAALEAARKQEIERGVTLVGPHRDDLVLRLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGTRYAVSEGTVERV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=658752 OHA58_RS17745 WP_405479809.1 3933445..3934569(-) (recF) [Streptomyces sp. NBC_00009]
ATGCACGTGACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGAACCGGGCGTCACCGC
GTTCGTGGGCCCGAACGGGCAGGGCAAGACCAACCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTTGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTCCGCATGGGCGCCGAGCGCGCTGTCATCCGGGCCGCGGTCCGGCAGGGCGAGCGCCAG
CAGCTCATCGAGCTCGAACTCAACCCGGGCAAGGCGAACCGCGCCAGGATCAACCGGTCCTCGCAGGTCAGACCCCGTGA
TGTGCTCGGCATCGTGCGCACGGTCCTGTTCGCGCCGGAGGACCTCGCGCTCGTCAAGGGCGACCCCGGCGAGCGCCGCC
GCTTCCTCGACGAGCTGATCACGGCCCGCTCCCCGCGCATGGCTGGTGTCCGGTCCGACTACGACCGTGTACTCAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCGCTCGCCCGCAGGCACGGCGGCCGGTCCATGGACCTGTCGACCCTCGACGTGTG
GGACCAGCACCTCGCGCGCGTAGGCGCCGAGCTGCTCGCCCAGCGGTTCGACCTGATCGCCACGCTCCAGCCGCTCGCCG
ACAAGGCGTACGAACAGCTGGCGCCCGGCGGCGGGCCGCTCGCCCTGGAGTACAAGCCGTCCTCGCCCGAAATCGACGGC
CACGCGCGCGAAGAGCTCTACGAGCAGCTGATGGCCGCCCTCGAAGCGGCCCGCAAACAGGAGATCGAGCGGGGCGTGAC
CCTCGTCGGACCGCACCGCGACGACCTGGTCCTCAGGCTCGGCCAGCTGCCGGCGAAGGGGTACGCCAGCCATGGCGAGT
CCTGGTCGTACGCGCTGGCGCTGCGCCTGGCCTCGTACGACCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTCGTGCTC
GACGACGTCTTCGCGGAGCTCGACGCGCGGCGCAGGGAGCGCCTCGCCGAGCTGGTCGCCCCCGGCGAGCAGGTCCTGGT
GACGGCCGCGGTGGACGACGACGTGCCGGGCGTCCTGGCGGGCACGCGGTACGCGGTGTCCGAAGGCACGGTGGAGCGGG
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361