Detailed information NTG0065868

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7R08_RS05310
• Genome accession: NZ_AP022095
• Coordinates: 1126291..1127283 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081574.1
• Uniprot ID: A0A096ZJU3
• Organism: Escherichia coli strain WP4-S18-ESBL-08
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1121291..1132283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7R08_RS05280 (WP4S18E08_10360)	ispD	1121352..1122062 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7R08_RS05285 (WP4S18E08_10370)	ispF	1122062..1122541 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7R08_RS05290 (WP4S18E08_10380)	truD	1122538..1123587 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H7R08_RS05295 (WP4S18E08_10390)	surE	1123568..1124329 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H7R08_RS05300 (WP4S18E08_10400)	pcm	1124323..1124949 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H7R08_RS05305 (WP4S18E08_10410)	nlpD	1125134..1126228 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H7R08_RS05310 (WP4S18E08_10420)	rpoS	1126291..1127283 (+)	993	WP_000081574.1	RNA polymerase sigma factor RpoS	Regulator
H7R08_RS05315 (WP4S18E08_10430)	ygbN	1127377..1128741 (-)	1365	WP_000104459.1	GntP family transporter	-
H7R08_RS05320 (WP4S18E08_10440)	ygbM	1128830..1129606 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
H7R08_RS05325 (WP4S18E08_10450)	ygbL	1129611..1130249 (-)	639	WP_001278994.1	aldolase	-
H7R08_RS05330 (WP4S18E08_10460)	otnK	1130246..1131508 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37973.79 Da
• Isoelectric Point: 4.5597

>NTDB_id=65868 H7R08_RS05310 WP_000081574.1 1126291..1127283(+) (rpoS) [Escherichia coli strain WP4-S18-ESBL-08]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLNRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=65868 H7R08_RS05310 WP_000081574.1 1126291..1127283(+) (rpoS) [Escherichia coli strain WP4-S18-ESBL-08]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGAACCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A096ZJU3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712