Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OHA19_RS20405 Genome accession   NZ_CP108309
Coordinates   4437949..4439079 (+) Length   376 a.a.
NCBI ID   WP_405714613.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4432949..4444079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA19_RS20395 (OHA19_20300) dnaN 4435723..4436853 (+) 1131 WP_072487582.1 DNA polymerase III subunit beta -
  OHA19_RS20400 (OHA19_20305) gnd 4436985..4437863 (+) 879 WP_358946868.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OHA19_RS20405 (OHA19_20310) recF 4437949..4439079 (+) 1131 WP_405714613.1 DNA replication/repair protein RecF Machinery gene
  OHA19_RS20410 (OHA19_20315) - 4439076..4439648 (+) 573 WP_405714611.1 DUF721 domain-containing protein -
  OHA19_RS20415 (OHA19_20320) gyrB 4440061..4442166 (+) 2106 WP_405714610.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40876.54 Da        Isoelectric Point: 6.7126

>NTDB_id=658679 OHA19_RS20405 WP_405714613.1 4437949..4439079(+) (recF) [Streptomyces sp. NBC_00012]
MHVTHLSLADFRSYARVEVPLEPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAVIRAAVTQGERS
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLHPLADKAYADVAPGGGPLALEYRSSVGADVE
PARTREELYEQLIAALADVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYDLLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGALAGTRFAVSAGEVERL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=658679 OHA19_RS20405 WP_405714613.1 4437949..4439079(+) (recF) [Streptomyces sp. NBC_00012]
ATGCATGTCACGCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTACCTCTCGAGCCGGGCGTCACCGC
TTTCGTGGGGGCCAACGGCCAGGGCAAGACGAATCTGGTCGAAGCGGTCGGCTATCTCGCGACCCTCGGCAGCCACCGGG
TCTCGTCCGACGCACCGCTGGTGCGGATGGGCGCGGACCGGGCCGTCATCCGCGCCGCCGTGACGCAGGGCGAGCGTTCG
CAGCTGATCGAGCTGGAGCTCAACCCGGGCAAGGCCAACCGGGCGCGTATCAATAGATCGTCCCAGGTCAGGCCCCGTGA
CGTGCTGGGGATAGTCCGTACGGTGCTGTTCGCGCCGGAGGATCTGGCGCTGGTCAAGGGGGACCCTGGCGAGCGCCGGC
GCTTCCTCGACGAGCTGATCACGGCCCGTTCGCCGCGGATGGCGGGTGTGCGCTCGGACTACGAGCGCGTGCTGAAGCAG
CGCAACACCCTGCTGAAGTCGGCGGCGATGGCGCGCCGGCACGGTGGCCGGTCGATGGACCTGTCCACGCTCGACGTGTG
GGACCAGCACCTGGGCCGGGTGGGCGCGGAGCTGCTGGCACAGCGGCTGGATCTGATCGCCACCCTCCATCCGCTGGCGG
ACAAGGCGTACGCGGATGTCGCGCCGGGCGGCGGCCCGCTGGCCCTGGAGTACCGCAGCTCGGTCGGGGCGGACGTGGAG
CCCGCGCGTACCCGCGAGGAGCTGTACGAGCAGCTGATCGCCGCGCTGGCGGATGTCCGCAAGCAGGAGATCGAGCGGGG
CGTGACACTGGTCGGACCGCACCGCGACGATCTGCTGCTGGGACTGCGGGGCATGCCGGCCAAGGGATACGCGAGCCATG
GCGAGTCCTGGTCGTACGCGTTGGCGCTGCGGCTGGCCTCGTACGACCTGCTGCGCAGCGAGGGCAACGAGCCGGTGCTG
GTGCTCGACGACGTCTTCGCGGAGCTGGACGCGCGGCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCGGGTGAGCAGGT
GCTGGTGACGGCCGCGGTGGACGACGACGTTCCGGGGGCGCTGGCGGGGACCCGGTTCGCGGTGTCCGCGGGTGAGGTGG
AGCGGCTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.705

97.34

0.367