Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   H7R08_RS03875 Genome accession   NZ_AP022095
Coordinates   818574..819746 (-) Length   390 a.a.
NCBI ID   WP_001428203.1    Uniprot ID   -
Organism   Escherichia coli strain WP4-S18-ESBL-08     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 813574..824746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R08_RS03860 (WP4S18E08_07560) - 815505..816173 (+) 669 WP_001405893.1 ABC transporter ATP-binding protein -
  H7R08_RS03865 (WP4S18E08_07590) - 816516..817744 (+) 1229 WP_089541817.1 IS3 family transposase -
  H7R08_RS03870 (WP4S18E08_07600) - 817814..818350 (+) 537 WP_244580235.1 glycosyltransferase family A protein -
  H7R08_RS03875 (WP4S18E08_07610) kpsS 818574..819746 (-) 1173 WP_001428203.1 capsular biosynthesis protein Regulator
  H7R08_RS03880 (WP4S18E08_07620) - 819781..821808 (-) 2028 WP_182913387.1 capsular polysaccharide biosynthesis protein -
  H7R08_RS03885 (WP4S18E08_07630) kdsB 821805..822545 (-) 741 WP_001720597.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H7R08_RS03890 (WP4S18E08_07640) - 822555..824231 (-) 1677 WP_001331697.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 46618.80 Da        Isoelectric Point: 9.9847

>NTDB_id=65863 H7R08_RS03875 WP_001428203.1 818574..819746(-) (kpsS) [Escherichia coli strain WP4-S18-ESBL-08]
MQGNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWANTKEIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPEIPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLVKTQINAVYYG

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=65863 H7R08_RS03875 WP_001428203.1 818574..819746(-) (kpsS) [Escherichia coli strain WP4-S18-ESBL-08]
ATGCAAGGTAATGCACTAAGCATTTTGTTATCCGGTAAAAAGTACCTACTATTGCAGGGACCAATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGCGACTGCCGCCCATTACACAAAGAAGCAAAACGGTGGGCGAATACGAAAGAGATCCG
CTTTCTGGCATTTGAAGAGGGGTATTTACGTCCGCAATTTATTACTGTTGAAGAAGGTGGTGTGAACGCATATTCATCAC
TACCGCGCGATCCGGATTTTTATCGTAAGCTACCAGAAATACCTGCACCACACGTTGAAAATTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGGTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGCGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCAGTAGTA
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTATGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGACTTTAAACCGGATATGAAGCTGTTTAAGAAGT
TTCGGGAGTATTTATTGGTGAAGACACAGATTAATGCGGTTTATTATGGTTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.332

99.744

0.392

Multiple sequence alignment