Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG613_RS32830 Genome accession   NZ_CP108306
Coordinates   7398512..7399291 (-) Length   259 a.a.
NCBI ID   WP_028806029.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00015     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7393512..7404291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG613_RS32815 (OG613_32795) - 7393567..7395507 (+) 1941 WP_405967953.1 IucA/IucC family protein -
  OG613_RS32820 (OG613_32800) - 7395588..7396211 (+) 624 WP_267021123.1 GNAT family N-acetyltransferase -
  OG613_RS32825 (OG613_32805) - 7396381..7398357 (+) 1977 WP_267021124.1 ATP-dependent DNA helicase -
  OG613_RS32830 (OG613_32810) dinR/lexA 7398512..7399291 (-) 780 WP_028806029.1 transcriptional repressor LexA Regulator
  OG613_RS32835 (OG613_32815) nrdR 7399875..7400444 (+) 570 WP_267021729.1 transcriptional regulator NrdR -
  OG613_RS32840 (OG613_32820) - 7400611..7403511 (+) 2901 WP_267021125.1 vitamin B12-dependent ribonucleotide reductase -
  OG613_RS32845 (OG613_32825) - 7403642..7404175 (-) 534 WP_405967954.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28051.80 Da        Isoelectric Point: 7.0666

>NTDB_id=658628 OG613_RS32830 WP_028806029.1 7398512..7399291(-) (dinR/lexA) [Streptomyces sp. NBC_00015]
MTTTADSATITAQDRSQGRLEPVHAMNEAMNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQASSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=658628 OG613_RS32830 WP_028806029.1 7398512..7399291(-) (dinR/lexA) [Streptomyces sp. NBC_00015]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAATCCCGAGGGACACAAGCGCTCTCTGCCTGGGCGACCTCCAGGCATCCGCGCCGACAGCTCGGGGCTCA
CCGACCGGCAGCGCCGAGTGATCGAGGTCATCAGGGACTCCGTACAGCGGCGCGGCTACCCGCCGTCCATGCGGGAGATC
GGTCAGGCGGTCGGCCTGTCCAGCACGTCCTCGGTCGCCCACCAGCTGATGGCACTGGAGCGGAAGGGCTTCCTGCGCCG
CGACCCGCACCGGCCGCGCGCCTACGAGGTGCGAGGTTCCGACCAGGCCAGCTCCGTACAGCCCACGGACACCGCCGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTCGGACGCATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAAGAC
GTCTTCCCCCTCCCGCGGCAGTTGGTGGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTGGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTGGCGGCGATGCTGG
ACGGCGAGGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTGTGGCTCCTCCCGCACAACGCGGCGTACGAGCCG
ATCCCGGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTACTCCGCCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375