Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG613_RS20375 Genome accession   NZ_CP108306
Coordinates   4621046..4622044 (-) Length   332 a.a.
NCBI ID   WP_054244055.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00015     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4616046..4627044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG613_RS20360 (OG613_20370) - 4616575..4618152 (-) 1578 WP_405967402.1 MFS transporter -
  OG613_RS20365 (OG613_20375) - 4618215..4619276 (+) 1062 WP_405967403.1 helix-turn-helix transcriptional regulator -
  OG613_RS20370 (OG613_20380) - 4619273..4620013 (-) 741 WP_405968725.1 TetR family transcriptional regulator -
  OG613_RS20375 (OG613_20385) rpoS 4621046..4622044 (-) 999 WP_054244055.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG613_RS20380 (OG613_20390) - 4622230..4622769 (+) 540 WP_267022635.1 GNAT family N-acetyltransferase -
  OG613_RS20385 (OG613_20395) - 4622822..4623631 (-) 810 WP_267022634.1 dioxygenase -
  OG613_RS20390 (OG613_20400) - 4623911..4624420 (+) 510 WP_037736359.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG613_RS20395 (OG613_20405) - 4624434..4625972 (-) 1539 WP_267022633.1 MFS transporter -
  OG613_RS20400 (OG613_20410) - 4626221..4626868 (-) 648 WP_020131925.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37320.07 Da        Isoelectric Point: 4.9765

>NTDB_id=658592 OG613_RS20375 WP_054244055.1 4621046..4622044(-) (rpoS) [Streptomyces sp. NBC_00015]
MATRAVARRKSANGETTDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQVLDGDEESRSV
ATREELETLVAESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIATELGSTPERVTDVLDWARDPVSLNMAVDDQGETQF
GDLLEDTSAVSPEQSVMTLLRSEELDGLIDRLEPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=658592 OG613_RS20375 WP_054244055.1 4621046..4622044(-) (rpoS) [Streptomyces sp. NBC_00015]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCAACGGCGAGACGACCGACGCGGCCCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAAATCGCGCGCACACCTCTGCTCGACGCCGCCAAGG
AAGTCGAGTTGTCACAGATCATCGAGGCGGGTGTCTTCGCGCAGCAGGTCCTCGACGGCGACGAGGAGTCGCGGTCCGTC
GCCACGCGCGAAGAACTCGAGACCCTGGTGGCCGAGAGCGAGCGGGCCAAGGATGTCTTCATCCGCTCCAACCTCCGGCT
GGTCGTCGCGGTGGCCCGCCGCTACCCCCGTAGCGGTCTGCCGCTCCTCGACCTCATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACGCGTTCGATAGCGGACCAGTCGCGCACGATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGTCGAGT
CCAGCGCGAGTTCAACCGCGAGAACGGCCGTGACCCCGAGCCCGCCGAGATCGCGACCGAGCTCGGCTCGACGCCGGAGC
GCGTCACGGACGTCCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGGCGGTCGACGACCAGGGTGAGACCCAGTTC
GGCGACCTGCTGGAGGACACGTCCGCGGTCTCGCCGGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAGTTGGACGG
CCTCATCGACCGTCTCGAGCCGCGCACGGCTTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACCGAGGTGGGCAAGGAACACGGTCTGACACGCGAACGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAG
AAGCTGGCCCGCGACACGGGCTTCGAGGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361