Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG613_RS17880 Genome accession   NZ_CP108306
Coordinates   4035768..4036775 (+) Length   335 a.a.
NCBI ID   WP_267019792.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00015     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4030768..4041775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG613_RS17865 (OG613_17885) - 4031449..4032309 (-) 861 Protein_3544 EamA family transporter -
  OG613_RS17870 (OG613_17890) - 4032397..4033305 (+) 909 WP_267019794.1 LysR family transcriptional regulator -
  OG613_RS17875 (OG613_17895) - 4033729..4035513 (+) 1785 WP_405967283.1 glycoside hydrolase family 3 protein -
  OG613_RS17880 (OG613_17900) cytR 4035768..4036775 (+) 1008 WP_267019792.1 LacI family DNA-binding transcriptional regulator Regulator
  OG613_RS17885 (OG613_17905) - 4036785..4037600 (-) 816 WP_405967284.1 carbohydrate ABC transporter permease -
  OG613_RS17890 (OG613_17910) - 4037602..4038492 (-) 891 WP_405967285.1 carbohydrate ABC transporter permease -
  OG613_RS17895 (OG613_17915) - 4038467..4039780 (-) 1314 WP_365118382.1 extracellular solute-binding protein -
  OG613_RS17900 - 4039942..4040016 (-) 75 WP_350328511.1 putative leader peptide -
  OG613_RS17905 (OG613_17920) - 4040117..4041547 (-) 1431 WP_365118379.1 S28 family serine protease -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 35550.67 Da        Isoelectric Point: 9.0792

>NTDB_id=658586 OG613_RS17880 WP_267019792.1 4035768..4036775(+) (cytR) [Streptomyces sp. NBC_00015]
MRAGIGLREVAERAGVSMRTVSNVVRGTGRFSETTRERVLHAVEELGYRPNTAARRLRTGRSGVLLLAVPDLSMPYFAEL
AGHLLREAAGLGRTLLVEATGGRPEAELEIVLGRTDPLVDGVILSPLALDDRAAARAGSTAPLVLLGERVHDLPCPHVTI
DNTGAAREATAHLLARGRRRIAVIGRQTVPHAATSATRLAGHRQSLERAGLRYDESLAPPVAAYHRADGAAAMRALLDLP
QPPDAVFCFADALAQGALHAVRERGLTVPGDVAVVGFDDVEEARYAAPPLTTIAPDKRELARLAVTALVDRTGGRTPAES
TVLIAGHRLVVREST

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=658586 OG613_RS17880 WP_267019792.1 4035768..4036775(+) (cytR) [Streptomyces sp. NBC_00015]
ATGCGCGCAGGGATCGGGCTCAGGGAGGTGGCCGAGCGGGCCGGCGTGTCCATGCGGACCGTGTCCAACGTGGTCCGCGG
CACCGGGCGTTTCTCCGAGACCACCCGCGAGCGGGTGCTGCACGCGGTCGAGGAACTCGGCTACCGGCCCAACACCGCCG
CCCGGCGGCTGCGCACCGGCCGCAGCGGGGTACTGCTGCTCGCCGTGCCCGACCTCTCCATGCCGTACTTCGCCGAGCTG
GCCGGACATCTGCTGCGAGAGGCCGCGGGGCTCGGCCGCACCCTGCTCGTGGAGGCCACCGGGGGCCGCCCGGAGGCCGA
GCTGGAGATCGTCCTCGGCCGGACCGATCCGCTGGTGGACGGGGTGATCCTGAGCCCGCTCGCGCTCGACGACCGGGCCG
CCGCCCGGGCCGGGTCCACCGCGCCGCTGGTGCTGCTCGGCGAGCGCGTGCACGACCTGCCCTGTCCGCACGTCACCATC
GACAACACCGGTGCGGCCCGCGAGGCGACCGCGCATCTGCTGGCCCGCGGCCGCCGCAGGATCGCGGTGATCGGCCGCCA
GACCGTGCCGCACGCCGCGACCTCCGCGACCCGCCTGGCCGGTCACCGGCAGTCCCTGGAACGGGCCGGACTGCGCTACG
ACGAGTCGCTCGCGCCGCCCGTCGCCGCCTACCACCGGGCCGACGGCGCCGCCGCCATGCGCGCCCTCCTCGACCTGCCG
CAACCGCCCGACGCGGTGTTCTGCTTCGCCGACGCGCTGGCCCAGGGCGCCCTGCACGCCGTACGGGAGCGGGGGCTGAC
GGTCCCCGGGGATGTCGCGGTCGTCGGTTTCGACGACGTCGAGGAGGCGCGCTACGCCGCTCCCCCGCTCACCACGATCG
CCCCGGACAAGCGGGAGCTGGCCCGGCTGGCGGTCACGGCCCTCGTGGACCGGACCGGCGGACGGACCCCGGCCGAGTCC
ACGGTGCTGATCGCCGGACACCGGCTCGTCGTCCGGGAAAGCACCTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-335)

Bacterial regulatory proteins, lacI family (LacI)

(7-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.446

99.104

0.361