Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG613_RS03895 Genome accession   NZ_CP108306
Coordinates   934027..934698 (-) Length   223 a.a.
NCBI ID   WP_365124559.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00015     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 929027..939698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG613_RS03885 (OG613_03900) - 929133..929456 (+) 324 WP_365124563.1 CU044_2847 family protein -
  OG613_RS03890 (OG613_03905) - 929473..933966 (+) 4494 WP_405966454.1 trypsin-like peptidase domain-containing protein -
  OG613_RS03895 (OG613_03910) dinR/lexA 934027..934698 (-) 672 WP_365124559.1 transcriptional repressor LexA Regulator
  OG613_RS03900 (OG613_03915) - 934908..935102 (-) 195 WP_405966455.1 hypothetical protein -
  OG613_RS03905 (OG613_03920) - 935156..935509 (-) 354 WP_362269723.1 transcriptional regulator -
  OG613_RS03910 (OG613_03925) - 935648..936625 (+) 978 WP_405966456.1 zinc-binding alcohol dehydrogenase family protein -
  OG613_RS03915 (OG613_03930) - 936919..938736 (+) 1818 WP_405966457.1 protein kinase domain-containing protein -
  OG613_RS03920 (OG613_03935) - 938809..939231 (-) 423 WP_405966458.1 VOC family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24233.56 Da        Isoelectric Point: 5.8719

>NTDB_id=658561 OG613_RS03895 WP_365124559.1 934027..934698(-) (dinR/lexA) [Streptomyces sp. NBC_00015]
MENTASARRGRPPGPRTAEGELTNRQSAIVRYITESVERQGYPPSMREIGQAVELASTSSVAHQLMALERKGVLYRDPQR
PRAYRVRPSWAPDLGARSETRVDVPLVGRIAAGAPLLAEEMVEDVYALPRQVVGDGDLFALTVSGDSMIDAAICDGDIVT
VRRQDSADHGDVVAALLGDEATVKVLRRQDGQVWLMPRNPAYAPIRGDEAQILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=658561 OG613_RS03895 WP_365124559.1 934027..934698(-) (dinR/lexA) [Streptomyces sp. NBC_00015]
ATGGAGAACACCGCGTCCGCCCGCCGGGGGCGTCCCCCGGGGCCCCGGACCGCCGAAGGAGAGCTGACGAACCGCCAGTC
GGCCATCGTCCGCTACATCACGGAGTCGGTCGAACGGCAGGGATACCCGCCGTCCATGCGGGAGATCGGCCAGGCCGTGG
AGCTCGCCAGCACGTCCTCGGTCGCCCATCAGCTGATGGCCCTCGAACGCAAGGGCGTGCTCTACCGGGATCCGCAACGC
CCCCGCGCCTACCGGGTCCGGCCCTCATGGGCGCCCGACCTGGGCGCCAGGAGCGAGACGCGGGTGGATGTGCCGCTCGT
CGGGCGGATCGCCGCCGGCGCCCCGCTGCTCGCCGAGGAGATGGTCGAGGACGTCTACGCCCTGCCCCGCCAGGTCGTGG
GCGACGGCGACCTGTTCGCCCTGACGGTCTCCGGCGACTCCATGATCGACGCGGCGATCTGCGACGGCGACATCGTGACC
GTACGGCGTCAGGACAGCGCCGATCACGGGGACGTCGTCGCCGCGCTCCTGGGCGACGAGGCCACCGTCAAGGTGCTGCG
CCGGCAGGACGGGCAGGTGTGGCTCATGCCCCGCAACCCGGCCTACGCGCCGATCCGCGGCGACGAGGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCGTGCTCTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.415

91.928

0.399