Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG933_RS12515 Genome accession   NZ_CP108304
Coordinates   2862630..2863409 (+) Length   259 a.a.
NCBI ID   WP_028806029.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00016     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2857630..2868409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG933_RS12500 (OG933_12490) - 2857747..2858280 (+) 534 WP_054243672.1 TerD family protein -
  OG933_RS12505 (OG933_12495) - 2858410..2861310 (-) 2901 WP_362527813.1 vitamin B12-dependent ribonucleotide reductase -
  OG933_RS12510 (OG933_12500) nrdR 2861477..2862046 (-) 570 WP_362527816.1 transcriptional regulator NrdR -
  OG933_RS12515 (OG933_12505) dinR/lexA 2862630..2863409 (+) 780 WP_028806029.1 transcriptional repressor LexA Regulator
  OG933_RS12520 (OG933_12510) - 2863566..2865542 (-) 1977 WP_054243674.1 ATP-dependent DNA helicase -
  OG933_RS12525 (OG933_12515) - 2865715..2866389 (-) 675 WP_405633363.1 GNAT family N-acetyltransferase -
  OG933_RS12530 (OG933_12520) - 2866418..2868358 (-) 1941 WP_405627098.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28051.80 Da        Isoelectric Point: 7.0666

>NTDB_id=658485 OG933_RS12515 WP_028806029.1 2862630..2863409(+) (dinR/lexA) [Streptomyces sp. NBC_00016]
MTTTADSATITAQDRSQGRLEPVHAMNEAMNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQASSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=658485 OG933_RS12515 WP_028806029.1 2862630..2863409(+) (dinR/lexA) [Streptomyces sp. NBC_00016]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAATCCCGAGGGACACAAGCGCTCTCTGCCTGGGCGACCTCCAGGCATCCGCGCCGACAGCTCGGGGCTCA
CCGACCGGCAGCGCCGAGTGATCGAGGTCATCAGGGACTCCGTACAGCGGCGCGGCTACCCGCCGTCCATGCGGGAGATC
GGTCAGGCGGTCGGCCTGTCCAGCACGTCCTCGGTCGCCCACCAGCTGATGGCACTGGAGCGGAAGGGCTTCCTGCGCCG
CGACCCGCACCGGCCGCGCGCCTACGAGGTGCGAGGTTCCGACCAGGCCAGCTCCGTGCAACCCACGGACACCGCCGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTCGGACGCATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAAGAC
GTCTTCCCCCTCCCGCGGCAGTTGGTGGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTGGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTGGCGGCGATGCTGG
ACGGCGAAGCAACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTCCTCCCGCACAACGCGGCCTACGAGCCG
ATCCCGGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTACTCCGCCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375