Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   MS6_RS17030 Genome accession   NZ_AP014525
Coordinates   694483..695577 (-) Length   364 a.a.
NCBI ID   WP_041052083.1    Uniprot ID   -
Organism   Vibrio cholerae MS6     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 689483..700577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6_RS17005 (MS6_A0778) - 689837..690235 (+) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -
  MS6_RS17015 (MS6_A0779) - 690473..690991 (+) 519 WP_000914961.1 hypothetical protein -
  MS6_RS17020 (MS6_A0780) - 691235..691900 (+) 666 WP_000268198.1 PilZ domain-containing protein -
  MS6_RS17025 (MS6_A0781) luxQ 691892..694465 (-) 2574 WP_041052081.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  MS6_RS17030 (MS6_A0782) luxP 694483..695577 (-) 1095 WP_041052083.1 substrate-binding domain-containing protein Regulator
  MS6_RS17035 (MS6_A0783) traF 695789..696949 (-) 1161 WP_001025858.1 conjugal transfer protein TraF -
  MS6_RS17040 (MS6_A0784) - 697051..697356 (-) 306 WP_000448828.1 GIY-YIG nuclease family protein -
  MS6_RS17045 (MS6_A0785) - 697356..698006 (-) 651 WP_041052087.1 YceH family protein -
  MS6_RS17050 (MS6_A0786) - 698048..698245 (-) 198 WP_001246071.1 hypothetical protein -
  MS6_RS17055 (MS6_A0788) - 698433..698753 (+) 321 WP_001089529.1 DUF496 family protein -
  MS6_RS17065 (MS6_A0790) - 699166..699417 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41210.84 Da        Isoelectric Point: 6.3129

>NTDB_id=65846 MS6_RS17030 WP_041052083.1 694483..695577(-) (luxP) [Vibrio cholerae MS6]
MKRKLISPLFLIAALFSSTAQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARISELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=65846 MS6_RS17030 WP_041052083.1 694483..695577(-) (luxP) [Vibrio cholerae MS6]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGCTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTCCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTCATTATTTCGGTGGTCTATCCCGGACAGCAAATTTCTGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGATACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
CGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTGCCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTTCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

99.176

100

0.992

Multiple sequence alignment