Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHU89_RS40520 Genome accession   NZ_CP108302
Coordinates   8764532..8765539 (+) Length   335 a.a.
NCBI ID   WP_405650090.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00019     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8759532..8770539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU89_RS40505 (OHU89_40415) - 8760402..8762882 (-) 2481 WP_405650084.1 ThuA domain-containing protein -
  OHU89_RS40510 (OHU89_40420) - 8763072..8764040 (+) 969 WP_405650086.1 multicopper oxidase domain-containing protein -
  OHU89_RS40515 (OHU89_40425) - 8764034..8764261 (-) 228 WP_405650088.1 hypothetical protein -
  OHU89_RS40520 (OHU89_40430) cytR 8764532..8765539 (+) 1008 WP_405650090.1 LacI family DNA-binding transcriptional regulator Regulator
  OHU89_RS40525 (OHU89_40435) - 8765536..8767020 (-) 1485 WP_405650091.1 HEAT repeat domain-containing protein -
  OHU89_RS40530 (OHU89_40440) - 8767064..8767849 (-) 786 WP_266885648.1 VOC family protein -
  OHU89_RS40535 (OHU89_40445) - 8768091..8768336 (+) 246 WP_199924482.1 WhiB family transcriptional regulator -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36059.73 Da        Isoelectric Point: 5.0422

>NTDB_id=658451 OHU89_RS40520 WP_405650090.1 8764532..8765539(+) (cytR) [Streptomyces sp. NBC_00019]
MTETAPRPTLEAVAERAGVSRATASRVVNGGDGVREPLVERVRRAVEELGYVPNQAARSLVTRRHDAIAVVVAEPETRVF
ADPFFALQLRGISKELTAHDNQLVLLLTEGRDDHARVGRYLAGGHVDGALVFSLHLDDPLPELIQRAGIPTVFGGRPGWS
DGSRDVVFVDSDNRGGARDAVRHLLGLGRTRVAHITGALDQTSAVDRLEGFRDVMGDTGPELVAEGDFTPGGGERAMREL
LERCPDVDGVFAANDLMASGALRVLREQGRRVPDDVAVIGFDDMLTVAEQTDPPLTTIRQDIEEMGRLMARLLLGTDGAA
SSVVLRTTLVRRASA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=658451 OHU89_RS40520 WP_405650090.1 8764532..8765539(+) (cytR) [Streptomyces sp. NBC_00019]
GTGACCGAGACAGCGCCGCGTCCCACGCTGGAGGCCGTGGCCGAGCGGGCCGGGGTGTCGCGGGCCACCGCGTCCCGGGT
GGTGAACGGTGGGGACGGGGTGCGGGAGCCTCTCGTCGAGCGGGTCCGGCGGGCGGTGGAGGAGCTGGGGTACGTGCCCA
ACCAGGCCGCCCGCAGCCTGGTGACGCGCCGGCACGACGCGATCGCCGTCGTCGTCGCCGAGCCGGAGACCCGGGTCTTC
GCCGACCCCTTCTTCGCGCTGCAACTCAGGGGCATCAGCAAGGAGTTGACGGCCCACGACAACCAGCTGGTCCTGCTGCT
GACCGAAGGGCGCGACGACCACGCCCGGGTCGGCCGGTACCTCGCCGGCGGCCATGTCGACGGGGCGCTCGTCTTCTCCC
TGCACCTCGACGATCCGCTGCCCGAACTGATCCAACGGGCCGGTATCCCGACGGTGTTCGGCGGCCGGCCCGGATGGAGC
GACGGCAGCCGTGACGTGGTGTTCGTCGACAGCGACAACCGGGGTGGGGCGCGGGACGCCGTACGCCATCTCCTGGGCCT
CGGCCGCACGCGCGTCGCGCACATCACCGGTGCCCTGGACCAGACGTCGGCGGTGGACCGGCTGGAGGGGTTCCGGGACG
TCATGGGGGACACCGGTCCGGAGCTGGTGGCCGAGGGGGACTTCACTCCCGGGGGCGGGGAACGGGCGATGCGGGAGCTG
CTCGAGCGCTGCCCGGACGTCGACGGCGTGTTCGCCGCGAACGACCTCATGGCGTCCGGGGCGCTGCGGGTGCTGCGTGA
GCAGGGGCGGCGCGTGCCTGACGACGTGGCCGTGATCGGGTTCGACGACATGCTGACGGTGGCGGAGCAGACCGATCCGC
CGCTCACGACGATCCGTCAGGACATCGAGGAGATGGGGCGGTTGATGGCCCGGCTGTTGCTGGGAACGGACGGCGCCGCG
TCCAGCGTCGTGCTGCGGACGACGCTGGTGCGGCGGGCGTCCGCCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.588

100

0.361