Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU89_RS36005 Genome accession   NZ_CP108302
Coordinates   7630708..7631487 (-) Length   259 a.a.
NCBI ID   WP_046257039.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00019     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7625708..7636487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU89_RS35995 (OHU89_35915) - 7627159..7628034 (+) 876 WP_405649137.1 GNAT family N-acetyltransferase -
  OHU89_RS36000 (OHU89_35920) - 7628556..7630532 (+) 1977 WP_405649138.1 ATP-dependent DNA helicase -
  OHU89_RS36005 (OHU89_35925) dinR/lexA 7630708..7631487 (-) 780 WP_046257039.1 transcriptional repressor LexA Regulator
  OHU89_RS36010 (OHU89_35930) nrdR 7632052..7632612 (+) 561 WP_405649139.1 transcriptional regulator NrdR -
  OHU89_RS36015 (OHU89_35935) - 7632776..7635670 (+) 2895 WP_405649140.1 vitamin B12-dependent ribonucleotide reductase -
  OHU89_RS36020 (OHU89_35940) - 7635821..7636057 (+) 237 WP_405649141.1 hypothetical protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27977.66 Da        Isoelectric Point: 7.0666

>NTDB_id=658441 OHU89_RS36005 WP_046257039.1 7630708..7631487(-) (dinR/lexA) [Streptomyces sp. NBC_00019]
MTTTADSATITAQDRSQGRLEPVHAMNEATNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=658441 OHU89_RS36005 WP_046257039.1 7630708..7631487(-) (dinR/lexA) [Streptomyces sp. NBC_00019]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCCCGAGGGGCACAAGCGCTCCCTGCCGGGCCGACCGCCAGGCATCCGGGCGGACAGCTCGGGGCTCA
CCGACCGCCAGCGCCGAGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGAGGGAGATC
GGACAGGCCGTCGGCCTCTCCAGCACCTCCTCTGTCGCACACCAACTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCATACGAGGTGCGCGGCTCCGACCAGGCCGCCTCCGCGCAGCCCACGGACACCGCCGGCA
AGCCCGCCGCGTCCTACGTCCCGCTGGTGGGCCGTATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAATCCGTCGAGGAC
GTGTTCCCGCTCCCCCGACAGCTCGTCGGTGACGGCGAGTTGTTCGTCCTGAAGGTCGTCGGCGACTCCATGATCGAAGC
CGCGATCTGCGACGGCGACTGGGTCACGGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTCG
ACGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCACAACGCCGCGTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCAGTTCTGCGCCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375