Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHU89_RS21915 Genome accession   NZ_CP108302
Coordinates   4679531..4680526 (-) Length   331 a.a.
NCBI ID   WP_405645190.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00019     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4674531..4685526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU89_RS21900 (OHU89_21865) - 4675458..4676219 (-) 762 WP_267015633.1 DeoR/GlpR family DNA-binding transcription regulator -
  OHU89_RS21905 (OHU89_21870) - 4676470..4678002 (-) 1533 WP_405645188.1 MFS transporter -
  OHU89_RS21910 (OHU89_21875) - 4678065..4679030 (+) 966 WP_405654599.1 helix-turn-helix transcriptional regulator -
  OHU89_RS21915 (OHU89_21880) rpoS 4679531..4680526 (-) 996 WP_405645190.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OHU89_RS21920 (OHU89_21885) - 4680709..4681227 (+) 519 WP_405645192.1 GNAT family N-acetyltransferase -
  OHU89_RS21925 (OHU89_21890) - 4681235..4682020 (-) 786 WP_405645194.1 dioxygenase -
  OHU89_RS21930 (OHU89_21895) - 4682130..4682645 (+) 516 WP_405645195.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHU89_RS21935 (OHU89_21900) - 4682761..4684302 (-) 1542 WP_405645197.1 MFS transporter -
  OHU89_RS21940 (OHU89_21905) - 4684422..4685063 (-) 642 WP_405645199.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37099.87 Da        Isoelectric Point: 5.0504

>NTDB_id=658402 OHU89_RS21915 WP_405645190.1 4679531..4680526(-) (rpoS) [Streptomyces sp. NBC_00019]
MATRAVARRKSANGGTDAASSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQLLDGIEESKADA
TREELEALFDESERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAIT
RSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSKADRVIDVLDWARDPVSLNMAVDDDGDTQFG
DLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKK
LARDTGFDAAA

Nucleotide


Download         Length: 996 bp        

>NTDB_id=658402 OHU89_RS21915 WP_405645190.1 4679531..4680526(-) (rpoS) [Streptomyces sp. NBC_00019]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCAATGGCGGGACCGACGCGGCAAGCAGTGTTCGCGCCCATGGCGG
CGAGATCGCCGATCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGGACACCGCTGCTCGACGCCGCCAAGGAGG
TCGAGCTGTCGCAGATCATCGAGGCGGGTGTGTTCGCCCGACAGCTTCTCGACGGAATCGAGGAGTCCAAGGCGGACGCC
ACCCGTGAGGAGCTCGAGGCGCTGTTCGACGAGTCCGAGCGGGCCAAGGACGTCTTCATCCGCTCGAACCTCCGTCTGGT
CGTCGCTGTCGCGCGCCGCTACCCCCGTGCCGGTCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCCGGTCTGGTGC
GCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATCACC
CGCTCGATAGCGGACCAGTCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTGGGCCGGATCCGCCGTGTGCA
GCGCGAGTTCAACCGCGAGCACGGCCGTGACCCGGAGCCCGCGGAGATCGCCGCCGAGCTCGGCTCGAAGGCCGACCGTG
TGATCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTGGACGACGACGGCGACACCCAGTTCGGC
GACCTGCTCGAGGACACCTCCGCGGTCTCCCCGGAGCAGTCGGTGCTGACGCTGCTGCGCAGCGAGGAGCTGGACGACCT
GATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGCTACGGCATCGAGGACGGCCGGGAGCGCACGCTGA
CCGAGGTCGGCAAGGAGCACGGTCTGACGCGCGAGCGCATCCGGCAGATCGAGAAGCATGCACTGCTGGAGCTGAAGAAG
CTCGCCCGGGACACCGGGTTCGACGCGGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70, region 4 (Sigma70_r4)

(268-320)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70 region 3 (Sigma70_r3)

(178-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.332

0.366