Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHU89_RS17410 Genome accession   NZ_CP108302
Coordinates   3656838..3658766 (+) Length   642 a.a.
NCBI ID   WP_405643981.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00019     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3651838..3663766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU89_RS17395 (OHU89_17380) - 3653080..3653385 (+) 306 WP_266892735.1 YtxH domain-containing protein -
  OHU89_RS17400 (OHU89_17385) - 3653503..3654942 (+) 1440 WP_266892733.1 FGGY-family carbohydrate kinase -
  OHU89_RS17405 (OHU89_17390) rcrP 3655105..3656838 (+) 1734 WP_405643979.1 ABC transporter ATP-binding protein Regulator
  OHU89_RS17410 (OHU89_17395) rcrQ 3656838..3658766 (+) 1929 WP_405643981.1 ABC transporter ATP-binding protein Regulator
  OHU89_RS17415 (OHU89_17400) - 3658874..3660169 (-) 1296 WP_266892727.1 RNA polymerase sigma factor -
  OHU89_RS17420 (OHU89_17405) dnaG 3660274..3662175 (-) 1902 WP_405643983.1 DNA primase -
  OHU89_RS17425 (OHU89_17410) - 3662205..3663470 (-) 1266 WP_405643985.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69943.44 Da        Isoelectric Point: 5.4236

>NTDB_id=658390 OHU89_RS17410 WP_405643981.1 3656838..3658766(+) (rcrQ) [Streptomyces sp. NBC_00019]
MAGPMGRMMAGTGPDHRSMDFKMSGRRLVGHFRPERFTVYALVFCVFVSVALSVVGPKILGEATDLVFAGIVGRQMEPGA
SKEQVLQAMRERGDGQVADMLRSTDFTPGEGIDFGAVGDVLLIALVVFVVAGLLMLVATRLVNRVVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLNQSMGQLINSILTIVGVLAMMFWVSWLLALVALVTVPLSFVIATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQQESAQQFAEQNEALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPMPGERPAELRGRVALE
GVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGSIVEQGAHGDLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=658390 OHU89_RS17410 WP_405643981.1 3656838..3658766(+) (rcrQ) [Streptomyces sp. NBC_00019]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGGACCGGCCCCGATCACCGGTCGATGGACTTCAAGATGTCGGGACGGCG
GCTCGTCGGCCATTTCCGGCCGGAGCGGTTCACGGTCTACGCGCTGGTGTTCTGTGTGTTCGTCAGCGTGGCTCTGTCGG
TCGTCGGGCCGAAGATCCTCGGCGAGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGACGGCAGATGGAGCCCGGCGCC
TCGAAGGAGCAGGTGCTTCAGGCGATGCGGGAGCGCGGGGACGGCCAGGTCGCCGACATGCTCCGCAGCACCGACTTCAC
CCCGGGCGAGGGCATCGACTTCGGTGCCGTCGGCGACGTCCTGTTGATCGCGCTCGTCGTGTTCGTCGTCGCCGGGCTGC
TGATGCTGGTGGCGACGCGGCTGGTGAACCGGGTCGTCAACCGGACCATGTTCCGGATGCGGGAGGACGTACAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGGGCGACGAACGACATCGACAA
CATCGGGCAGACCCTCAACCAGTCGATGGGCCAGCTCATCAATTCGATCCTCACCATCGTCGGGGTGCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTCGTCACCGTGCCGCTGTCGTTCGTGATCGCCACGCGCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGCAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTCGCG
GTGGTGGGTGGCCTGCGGGTCGCCTCCGGCACGCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCCAACCTGGTGCAGTCCGGGGTCGCCTCGGCCGAGCGGATCTTCGAGC
TGCTCGACGCCGAGGAGCAGGAGGCCGACCCCATGCCGGGCGAGCGGCCTGCCGAGCTGCGGGGGCGGGTGGCGCTGGAA
GGCGTGTCCTTCCGGTACGACCCCGAGAAGCCGCTCATCGAGGATCTGTCGCTCAAGGTGGAGCCGGGGCACACGGTCGC
GATCGTGGGTCCGACGGGAGCGGGCAAGACCACGCTGGTCAATCTGCTGATGCGCTTCTACGACGTCTCCGGCGGGCGCA
TCACTCTCGACGGGGTCGACATCGCGCGGATGTCCCGGGACGAACTGCGGGCCGGGATCGGGATGGTGCTGCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGAGGTCACCCGGGGCGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCGGACCGGTTCGTCCGGACGCTGCCCGACGGGTACGACACCGTGATCGACGACGAGGGTTCGG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTTCTCGACGAG
GCGACGTCGTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGACGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATTCTGGTGATGGAGGACGGTTCGATCGTGGAACAGG
GCGCGCACGGGGACCTGTTGGCGGCCGACGGGGCGTATGCGCGGCTGTACAAGGCACAGTTCGCGCAGGCGGTGGCAGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.235

93.302

0.385