Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHU89_RS17405 Genome accession   NZ_CP108302
Coordinates   3655105..3656838 (+) Length   577 a.a.
NCBI ID   WP_405643979.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00019     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3650105..3661838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU89_RS17370 (OHU89_17355) - 3650368..3650685 (+) 318 Protein_3455 transposase -
  OHU89_RS17375 (OHU89_17360) - 3651110..3651448 (-) 339 WP_405643976.1 carboxymuconolactone decarboxylase family protein -
  OHU89_RS17395 (OHU89_17380) - 3653080..3653385 (+) 306 WP_266892735.1 YtxH domain-containing protein -
  OHU89_RS17400 (OHU89_17385) - 3653503..3654942 (+) 1440 WP_266892733.1 FGGY-family carbohydrate kinase -
  OHU89_RS17405 (OHU89_17390) rcrP 3655105..3656838 (+) 1734 WP_405643979.1 ABC transporter ATP-binding protein Regulator
  OHU89_RS17410 (OHU89_17395) rcrQ 3656838..3658766 (+) 1929 WP_405643981.1 ABC transporter ATP-binding protein Regulator
  OHU89_RS17415 (OHU89_17400) - 3658874..3660169 (-) 1296 WP_266892727.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62834.03 Da        Isoelectric Point: 5.7250

>NTDB_id=658389 OHU89_RS17405 WP_405643979.1 3655105..3656838(+) (rcrP) [Streptomyces sp. NBC_00019]
MLIRLLRTYLRPYRKPIALLVVLQFLQTCATLYLPTLNADIIDSGVVKGDTGYILSFGALMIGISLIQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSSREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGICVTLIVRRLRPLFRAMQVRLDTVNQVLREQITGNRVIRAFVRDEYEKDRFRHANAELTEMSLGTGKYLAL
MFPMVMTVVNVSSIAVVWFGAHRIDDGQMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PKAPVLELRRHGHLEIRGAGFRYPGAEEPVLKGVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGESVA
GIEPELLARTVGMVPQRPYLFAGTVASNLRYGNPDATDEELWHALEVAQAKDFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSRETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=658389 OHU89_RS17405 WP_405643979.1 3655105..3656838(+) (rcrP) [Streptomyces sp. NBC_00019]
GTGCTCATACGTCTTCTGCGGACCTATCTCAGGCCCTACCGGAAACCCATCGCCCTCCTGGTGGTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAGCGGCGTCGTGAAGGGCGACACCGGGTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGTATCTCGCTGATCCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCG
CGGACCGCCGCGGCCCTGGGCCGGGACGTGCGGGCCGCCGTGTTCGACCGGGTGCAGTCCTTCTCCTCCCGCGAGGTGGG
CCACTTCGGGGCGCCCTCGCTGATCACCCGGACCACGAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGCGGTC
CTCGTCGCGGTCGTCCCCGTGCTGGGTATCTGCGTGACCTTGATCGTGCGGCGGCTGCGCCCGCTGTTCCGGGCCATGCA
GGTGCGCCTCGACACCGTGAACCAGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTGCGCGACG
AGTACGAGAAGGACCGCTTCCGGCACGCGAACGCCGAGCTCACCGAGATGTCCCTGGGCACCGGTAAGTACCTCGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACGTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACGACGG
GCAGATGCAGATCGGTGATCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGGATCCAGGAGGTGCTGGACACCTCGTCGAGCGTGGTTCCG
CCCAAGGCTCCGGTGCTGGAGCTGCGGCGCCATGGTCATCTGGAGATCCGCGGGGCGGGCTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTCAAGGGCGTCGATCTCGTGGCCCGGCCCGGTGAGGTGACCGCCGTCATCGGGTCGACCGGCAGCGGCA
AGTCCACGCTGCTGGGGCTCGTGCCCCGGCTGTTCGACGCCACCGACGGTCAGGTGCTGGTCGACGGGGAGAGCGTGGCG
GGCATCGAGCCCGAGCTGCTGGCGCGGACCGTCGGAATGGTGCCGCAGCGGCCGTACCTCTTCGCGGGGACCGTGGCGAG
CAATCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGGAGGGGCTGGAGAACGGGCTCGACTCCCCCATCGCCCAGGGCGGCACCAATGTCTCGGGTGGTCAGCGGCAGCGGCTC
GCCATCGCCCGTACGCTCGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCGGCCCTGTCCCGGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTACTCGACGAAGGCCGGGTCGTCGGCACCGGCCGGCATCACGAGCTGATGGCGGAGAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.459

97.4

0.404