Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   MS6_RS12475 Genome accession   NZ_AP014524
Coordinates   2704314..2705321 (-) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio cholerae MS6     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2699314..2710321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6_RS12450 (MS6_2388) rraA 2699889..2700404 (-) 516 WP_000456236.1 ribonuclease E activity regulator RraA -
  MS6_RS12455 (MS6_2389) - 2700479..2701396 (-) 918 WP_001893061.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  MS6_RS12460 (MS6_2390) hslU 2701500..2702831 (-) 1332 WP_001293366.1 HslU--HslV peptidase ATPase subunit -
  MS6_RS12465 (MS6_2391) hslV 2702897..2703454 (-) 558 WP_000208249.1 ATP-dependent protease subunit HslV -
  MS6_RS12470 (MS6_2392) - 2703591..2704142 (-) 552 WP_001884022.1 SPOR domain-containing protein -
  MS6_RS12475 (MS6_2394) cytR 2704314..2705321 (-) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  MS6_RS12480 (MS6_2395) priA 2705627..2707831 (-) 2205 WP_001247859.1 primosomal protein N' -
  MS6_RS12485 rpmE 2708086..2708304 (+) 219 WP_000643446.1 50S ribosomal protein L31 -
  MS6_RS12490 (MS6_2398) - 2708612..2709889 (+) 1278 WP_001278588.1 malic enzyme-like NAD(P)-binding protein -
  MS6_RS12495 (MS6_2399) metJ 2710000..2710317 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=65836 MS6_RS12475 WP_000224452.1 2704314..2705321(-) (cytR) [Vibrio cholerae MS6]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=65836 MS6_RS12475 WP_000224452.1 2704314..2705321(-) (cytR) [Vibrio cholerae MS6]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTAAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACATGATGTGCGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment