Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHU89_RS01610 Genome accession   NZ_CP108302
Coordinates   335635..336651 (-) Length   338 a.a.
NCBI ID   WP_405639093.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00019     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 330635..341651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU89_RS01580 (OHU89_01575) - 330981..331286 (-) 306 WP_405639083.1 putative quinol monooxygenase -
  OHU89_RS01585 (OHU89_01580) - 331446..332642 (+) 1197 WP_405639085.1 RNA-guided endonuclease InsQ/TnpB family protein -
  OHU89_RS01590 (OHU89_01585) - 332694..333080 (-) 387 WP_405639087.1 VOC family protein -
  OHU89_RS01595 (OHU89_01590) - 333143..334108 (+) 966 WP_405639089.1 helix-turn-helix transcriptional regulator -
  OHU89_RS01600 (OHU89_01595) - 334362..334682 (-) 321 WP_405639091.1 hypothetical protein -
  OHU89_RS01605 (OHU89_01600) - 334972..335543 (-) 572 Protein_320 transposase -
  OHU89_RS01610 (OHU89_01605) cytR 335635..336651 (-) 1017 WP_405639093.1 LacI family DNA-binding transcriptional regulator Regulator
  OHU89_RS01615 (OHU89_01610) - 336935..338245 (+) 1311 WP_405639095.1 extracellular solute-binding protein -
  OHU89_RS01620 (OHU89_01615) - 338346..339317 (+) 972 WP_405639097.1 carbohydrate ABC transporter permease -
  OHU89_RS01625 (OHU89_01620) - 339331..340272 (+) 942 WP_405639099.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36271.07 Da        Isoelectric Point: 5.8962

>NTDB_id=658357 OHU89_RS01610 WP_405639093.1 335635..336651(-) (cytR) [Streptomyces sp. NBC_00019]
MGERQRPTIITVAARAGVGRTTVSRVINGSELVSDKARAAVLAAIAELNYVPNSVARGLVTSRTNSVALVIPESESRLGS
EPYFSAVIRGVSTALAETRTQLQLVLVRDQAERDQLTESVAERRVDGVLLVSVHEHDPLPGLLEDMGLPTVLAGRRSPDE
SLSHVHSDNTGGAATAVNHLLARGRRTVATISGPLDMDVARSRLQGWREALEKAGHQATDRLVASADFTEEGGEAAMRSL
LERVPELDALFVASDVMAAGALAELRRQGRSVPDDVAVVGFDDSIIARHTNPPLSTVRQPVEEIGAMIGHILLEEIGDPK
RPRRRVTLPTELVVRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=658357 OHU89_RS01610 WP_405639093.1 335635..336651(-) (cytR) [Streptomyces sp. NBC_00019]
ATGGGGGAGAGGCAACGCCCGACCATCATTACCGTGGCCGCGCGCGCCGGCGTCGGACGCACCACGGTTTCACGAGTCAT
CAACGGCTCCGAGCTCGTCAGCGATAAGGCGAGGGCCGCCGTGCTCGCCGCCATCGCCGAACTCAACTACGTCCCGAACT
CGGTTGCCAGGGGGCTGGTGACGAGCCGGACGAACTCCGTGGCCCTGGTGATCCCCGAGTCGGAGAGCAGACTGGGCTCC
GAGCCCTACTTCTCGGCGGTCATCCGCGGTGTCAGCACCGCCCTCGCGGAGACCCGCACACAGCTCCAACTGGTGCTTGT
CCGCGACCAGGCCGAGCGGGACCAGCTCACCGAGTCCGTCGCGGAACGGCGTGTCGACGGGGTGCTCCTGGTCTCTGTCC
ACGAGCACGACCCGCTGCCGGGGCTGCTCGAGGACATGGGACTGCCCACGGTGCTCGCCGGACGCCGTTCCCCCGACGAG
TCGCTCAGCCACGTGCACTCCGACAACACGGGCGGAGCCGCGACGGCCGTCAACCACCTGCTCGCGCGGGGGCGGCGCAC
CGTCGCCACCATCAGCGGACCGCTTGACATGGACGTAGCGCGCAGCAGGCTCCAGGGATGGCGTGAGGCCCTCGAGAAGG
CGGGCCACCAGGCCACGGACCGACTCGTGGCCTCGGCCGACTTCACCGAGGAAGGCGGCGAGGCGGCGATGCGTTCACTC
CTTGAACGGGTTCCCGAGCTCGACGCCTTGTTCGTCGCCTCGGACGTCATGGCGGCGGGGGCTCTGGCGGAGCTGCGCAG
GCAGGGGAGGAGTGTCCCCGACGACGTGGCCGTGGTCGGATTCGACGACTCCATCATCGCCCGGCACACCAATCCACCCC
TCAGCACCGTGCGTCAGCCCGTCGAGGAGATCGGCGCCATGATCGGACACATCCTTCTGGAAGAGATCGGCGATCCCAAG
AGGCCGCGTCGGCGCGTCACGCTTCCCACTGAGCTCGTCGTACGCGAATCGTCATGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.628

100

0.373
  cytR Vibrio parahaemolyticus RIMD 2210633

35.569

100

0.361