Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG885_RS26270 Genome accession   NZ_CP108293
Coordinates   5840616..5841614 (+) Length   332 a.a.
NCBI ID   WP_405735679.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00028     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5835616..5846614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG885_RS26250 (OG885_26180) - 5836268..5836909 (+) 642 WP_405735669.1 TetR/AcrR family transcriptional regulator -
  OG885_RS26255 (OG885_26185) - 5837054..5838595 (+) 1542 WP_405735672.1 MFS transporter -
  OG885_RS26260 (OG885_26190) - 5838699..5839190 (-) 492 WP_405735675.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG885_RS26265 (OG885_26195) - 5839336..5840139 (+) 804 WP_405735677.1 dioxygenase -
  OG885_RS26270 (OG885_26200) rpoS 5840616..5841614 (+) 999 WP_405735679.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG885_RS26275 (OG885_26205) - 5842006..5842719 (+) 714 WP_405735682.1 TetR/AcrR family transcriptional regulator -
  OG885_RS26280 (OG885_26210) - 5843081..5844046 (-) 966 WP_405735685.1 helix-turn-helix transcriptional regulator -
  OG885_RS26285 (OG885_26215) - 5844109..5845644 (+) 1536 WP_405735688.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37439.19 Da        Isoelectric Point: 4.9127

>NTDB_id=658249 OG885_RS26270 WP_405735679.1 5840616..5841614(+) (rpoS) [Streptomyces sp. NBC_00028]
MATRAVARRQSASGEAVDKARSVRAHAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQMIEAGVFARQVLDGYEESKAE
ATREELEALVDEAERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIAQELGSTPERVTDVLDWARDPVSLNMSIDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=658249 OG885_RS26270 WP_405735679.1 5840616..5841614(+) (rpoS) [Streptomyces sp. NBC_00028]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCTCCGGCGAGGCCGTCGACAAGGCACGCAGTGTTCGCGCCCACGC
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCTCAGATGATCGAGGCGGGTGTGTTCGCGCGGCAGGTCCTCGACGGGTACGAGGAGTCGAAGGCGGAA
GCCACCCGCGAGGAGCTCGAGGCGCTGGTCGACGAGGCCGAGCGGGCCAAGGACGTCTTCATCCGGTCCAACCTCCGCCT
CGTGGTCGCGGTCGCCCGCCGCTACCCGCGCAGCGGCCTTCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TGCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGCCAGGCGATC
ACCCGCTCGATAGCCGACCAGTCGCGCACGATCCGCCTCCCCGTCCACCTCGTCGAGGAACTCGGCCGCATCCGCCGGGT
CCAGCGCGAGTTCAACCGGGAGAACGGCCGCGACCCGGAGCCCGCCGAGATCGCACAGGAGCTGGGCTCCACCCCCGAGC
GTGTGACGGACGTCCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGATCGACGACGACGGCGACACCCAGTTC
GGTGACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCCTGACCCTCCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCGTCGATCATCAAGATGCGCTACGGCATCGAGGACGGCCGGGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGGCTGACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTGAAG
AAGCTGGCCCGGGACACGGGGTTCGACGCGGCGGCATAG

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.137

90.06

0.37