Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKM38_RS02375 Genome accession   NZ_CP092501
Coordinates   513205..514584 (+) Length   459 a.a.
NCBI ID   WP_016526946.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain VHProbi V38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 508205..519584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKM38_RS02350 (MKM38_02350) - 508215..508907 (+) 693 WP_033609832.1 matrixin family metalloprotease -
  MKM38_RS02355 (MKM38_02355) - 509097..510428 (-) 1332 WP_003643927.1 C1 family peptidase -
  MKM38_RS02360 (MKM38_02360) rpiA 510504..511187 (-) 684 WP_003640926.1 ribose-5-phosphate isomerase RpiA -
  MKM38_RS02365 (MKM38_02365) - 511196..511492 (-) 297 WP_003640927.1 GNAT family N-acetyltransferase -
  MKM38_RS02370 (MKM38_02370) - 511631..512167 (+) 537 WP_003640928.1 dUTP diphosphatase -
  MKM38_RS02375 (MKM38_02375) radA 513205..514584 (+) 1380 WP_016526946.1 DNA repair protein RadA Machinery gene
  MKM38_RS02380 (MKM38_02380) - 514600..515775 (+) 1176 WP_003640931.1 PIN/TRAM domain-containing protein -
  MKM38_RS02385 (MKM38_02385) gltX 516099..517589 (+) 1491 WP_003640932.1 glutamate--tRNA ligase -
  MKM38_RS02390 (MKM38_02390) cysS 517867..519279 (+) 1413 WP_003644975.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50018.34 Da        Isoelectric Point: 8.0391

>NTDB_id=658248 MKM38_RS02375 WP_016526946.1 513205..514584(+) (radA) [Lactiplantibacillus plantarum strain VHProbi V38]
MAKAKTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVSLTKTPRVKTKLKEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAETGGSVLYVTGEESASQVKMRADRLAVSSEDFYLYPETDMSNIRST
IESTHPEFVVIDSVQTMQEPDMDSAIGSVSQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALVTPTVFGN
AKRTASGLDHNRVSLIMAVLEKRASLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGE
IRRVNRIESRVGEAAKLGFKRIFIPKNNLQGWNIPTGIEVIGVATLKEALQLALQQPNY

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=658248 MKM38_RS02375 WP_016526946.1 513205..514584(+) (radA) [Lactiplantibacillus plantarum strain VHProbi V38]
GTGGCAAAAGCAAAAACTCAGTTTGTTTGTTCTAACTGTGGTTATTCAACACCGCGATATTTAGGACGGTGTCCGAACTG
TGGTGAATGGAATACACTAACTGAAGAACATTTTGATACAAAACCGGACCGCAAGTCGCGGGTGAGCTTTGCGGGTAAGT
CGGCTAAGCCACAACGACTCAAAGAAGTGTCGCTGACTAAGACACCGCGTGTCAAGACTAAGCTGAAAGAGTTCAACCGG
GTCTTAGGTGGCGGTGTTGTGCCAGGTTCACTAGTTTTGATCGGTGGTGATCCAGGTATTGGTAAGTCAACGTTACTACT
GCAAGTTTCGGGGCAATTGGCCGAGACGGGTGGTTCCGTACTATACGTGACTGGTGAAGAAAGTGCCTCCCAAGTGAAGA
TGCGGGCGGACCGGCTGGCTGTTAGCAGTGAAGACTTTTATCTTTATCCTGAGACTGATATGTCGAATATTCGTTCAACG
ATTGAATCGACGCATCCAGAATTTGTGGTCATTGATTCGGTACAAACGATGCAAGAACCTGATATGGACTCTGCGATTGG
TTCAGTATCACAAATCCGTGAAATTACGGCTGAACTACTGCAAATTGCGAAGACTAACGGCATTACCATTTTTATTGTGG
GCCATGTGACTAAGGGTGGTGCCATTGCGGGGCCTAAGATCTTAGAACATATGGTTGATACCGTTTTGTACTTTGAAGGT
GATTTACATCATACGTACCGCATTTTACGGGCAGTCAAGAATCGATTCGGGTCAACGAATGAACTGGGAATATTTGAGAT
GCGGACGGGCGGTTTGTATGAAGTGGCCAATCCGTCAGAGATCTTCTTGGAAGAACGTCTGAAGGATGCTACGGGTTCCG
CCATCGTTGTTTCAATGGAAGGAACACGACCAATCTTAGTAGAAGTTCAAGCGCTGGTAACGCCAACGGTCTTTGGTAAT
GCGAAGCGGACCGCAAGTGGCTTGGATCATAATCGAGTCTCCTTGATTATGGCAGTGTTGGAAAAACGGGCGAGTCTAAT
GCTTCAGAACCAGGACGCGTATTTGAAAGCGGCCGGTGGCGTTAAGTTAGATGAACCGGCGATTGACTTAGCTATTGCGG
TCAGTGTGGCTTCTAGTTATCGTGACCAGCAGACTCGTCCGAGTGACTGTTTTGTTGGTGAAGTCGGTTTGACTGGTGAG
ATTCGGCGGGTCAACCGGATTGAATCACGAGTTGGTGAGGCGGCTAAGCTAGGTTTTAAACGTATCTTTATTCCTAAGAA
TAATCTGCAAGGTTGGAATATCCCAACTGGAATCGAAGTAATTGGAGTTGCCACGCTAAAAGAAGCGCTCCAATTAGCAT
TACAACAACCAAATTATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(59-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.849

98.257

0.667
  radA Streptococcus pneumoniae D39

67.849

98.257

0.667
  radA Streptococcus pneumoniae R6

67.849

98.257

0.667
  radA Streptococcus pneumoniae TIGR4

67.849

98.257

0.667
  radA Streptococcus mitis NCTC 12261

67.849

98.257

0.667
  radA Streptococcus mitis SK321

67.849

98.257

0.667
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

99.346

0.651