Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LU695_RS13665 Genome accession   NZ_CP092500
Coordinates   2745099..2745728 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain A30     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2740099..2750728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU695_RS13650 (LU695_13650) helD 2740341..2742395 (-) 2055 WP_001295354.1 DNA helicase IV -
  LU695_RS13655 (LU695_13655) yccF 2742518..2742964 (+) 447 WP_243044912.1 YccF domain-containing protein -
  LU695_RS13660 (LU695_13660) yccS 2742974..2745136 (+) 2163 WP_000875061.1 YccS family putative transporter -
  LU695_RS13665 (LU695_13665) sxy/tfoX 2745099..2745728 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LU695_RS13670 (LU695_13670) sulA 2745947..2746456 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LU695_RS13675 (LU695_13675) ompA 2746813..2747865 (+) 1053 WP_000750419.1 porin OmpA -
  LU695_RS13680 (LU695_13680) matP 2747940..2748392 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  LU695_RS13685 (LU695_13685) ycbZ 2748578..2750338 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=658233 LU695_RS13665 WP_000839153.1 2745099..2745728(-) (sxy/tfoX) [Escherichia coli strain A30]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=658233 LU695_RS13665 WP_000839153.1 2745099..2745728(-) (sxy/tfoX) [Escherichia coli strain A30]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1