Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   MJ920_RS17905 Genome accession   NZ_CP092499
Coordinates   3610563..3611708 (+) Length   381 a.a.
NCBI ID   WP_278269344.1    Uniprot ID   -
Organism   Bacillus velezensis strain YC_89     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3605563..3616708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ920_RS17885 (MJ920_17850) - 3606037..3606753 (-) 717 WP_014306017.1 Crp/Fnr family transcriptional regulator -
  MJ920_RS17890 (MJ920_17855) narK 3606851..3608041 (-) 1191 WP_095315495.1 nitrate transporter NarK -
  MJ920_RS17895 (MJ920_17860) argS 3608176..3609846 (-) 1671 WP_003151071.1 arginine--tRNA ligase -
  MJ920_RS17900 (MJ920_17865) - 3609843..3610271 (-) 429 WP_003151069.1 DUF1934 family protein -
  MJ920_RS17905 (MJ920_17870) rapF 3610563..3611708 (+) 1146 WP_278269344.1 tetratricopeptide repeat protein Regulator
  MJ920_RS17910 (MJ920_17875) - 3611692..3611811 (+) 120 WP_003151066.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  MJ920_RS17915 (MJ920_17880) - 3612010..3612213 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  MJ920_RS17920 (MJ920_17885) - 3612227..3612430 (+) 204 WP_003151062.1 hypothetical protein -
  MJ920_RS17925 (MJ920_17890) - 3612465..3612650 (+) 186 Protein_3473 DUF4177 domain-containing protein -
  MJ920_RS17930 (MJ920_17895) - 3612838..3613119 (+) 282 WP_014306021.1 hypothetical protein -
  MJ920_RS17935 (MJ920_17900) - 3613163..3613675 (+) 513 WP_003151059.1 stage II sporulation protein M -
  MJ920_RS17940 (MJ920_17905) - 3614266..3614484 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  MJ920_RS17945 (MJ920_17910) speB 3614654..3615526 (-) 873 WP_003151054.1 agmatinase -
  MJ920_RS17950 (MJ920_17915) speE 3615586..3616416 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45355.49 Da        Isoelectric Point: 4.9264

>NTDB_id=658216 MJ920_RS17905 WP_278269344.1 3610563..3611708(+) (rapF) [Bacillus velezensis strain YC_89]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=658216 MJ920_RS17905 WP_278269344.1 3610563..3611708(+) (rapF) [Bacillus velezensis strain YC_89]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACATGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAAAGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(223-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

74.541

100

0.745
  rapC Bacillus subtilis subsp. subtilis str. 168

53.158

99.738

0.53