Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG753_RS29555 Genome accession   NZ_CP108292
Coordinates   6293187..6294404 (+) Length   405 a.a.
NCBI ID   WP_327264650.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00029     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6288187..6299404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG753_RS29540 (OG753_29495) - 6289030..6290463 (+) 1434 WP_327264647.1 sugar porter family MFS transporter -
  OG753_RS29545 (OG753_29500) - 6290505..6291491 (-) 987 WP_327264648.1 LLM class flavin-dependent oxidoreductase -
  OG753_RS29550 (OG753_29505) - 6291554..6293044 (-) 1491 WP_405790785.1 purine-cytosine permease family protein -
  OG753_RS29555 (OG753_29510) pilA 6293187..6294404 (+) 1218 WP_327264650.1 signal recognition particle-docking protein FtsY Machinery gene
  OG753_RS29560 (OG753_29515) - 6294522..6295190 (-) 669 WP_405790787.1 bifunctional DNA primase/polymerase -
  OG753_RS29565 (OG753_29520) - 6295610..6297100 (+) 1491 WP_383204502.1 hypothetical protein -
  OG753_RS29570 (OG753_29525) - 6297412..6298755 (+) 1344 WP_327264652.1 ammonium transporter -
  OG753_RS29575 (OG753_29530) - 6298752..6299090 (+) 339 WP_030009357.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42413.63 Da        Isoelectric Point: 4.4238

>NTDB_id=658161 OG753_RS29555 WP_327264650.1 6293187..6294404(+) (pilA) [Streptomyces sp. NBC_00029]
MDILILAVVIALVAVGVISGLVVSSRKKKQLPPPAPPSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVGLPEAAAPAPA
PVAEPEPEVPAAPAIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLVADVGVVPTQELVDR
LRERVKVLGTRTPADLRALLKEELLTLVGTDFDRVVKTESGEDTPGVIMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=658161 OG753_RS29555 WP_327264650.1 6293187..6294404(+) (pilA) [Streptomyces sp. NBC_00029]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCCCGGCACCGCCGAGCACGCCGACCATCACTGCCCCGCCTGCCGAGCCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCGCGCCGCACGATCGAGGAGGTCGGACTCCCGGAGGCCGCGGCTCCCGCCCCGGCG
CCGGTAGCCGAACCCGAGCCCGAGGTCCCGGCCGCGCCCGCGATCGAGGTGCCCGAGCCCACCGCCGGTCGCCTGGTGCG
GCTGCGCGCCCGTCTCGCCCGGTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCCCGCGAGCACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTTCTCGTCGCCGACGTCGGTGTCGTACCGACCCAGGAGCTCGTGGACCGG
CTCCGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCGGCGGATCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGACCCT
GGTCGGCACCGACTTCGACCGCGTCGTGAAGACGGAGAGCGGCGAGGACACCCCCGGTGTGATCATGGTCGTCGGCGTCA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCG
GCGGACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGTACCGTGCGCGGCCC
CGAGGGCGGCGACCCGGCATCGATCGCCTACGACGCGGTCAAGGAGGGCATTGCCGAGGGCGCCGACGTGGTGCTCATCG
ACACCGCCGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGT
CCGCTGGACGAGATCCTGCTGGTCCTGGACGCCACCACCGGTCAGAACGGCCTGACCCAGGCCCGGGTCTTCGCCGAGGT
CGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACGGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAGC
TGGGCGTCCCCGTCAAGCTCATCGGGCTCGGCGAGGGTCCGGACGACCTGGCGCCCTTCGAGCCCGAGGCGTTCGTCGAC
GCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(206-403)

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.821

100

0.417