Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG753_RS27190 Genome accession   NZ_CP108292
Coordinates   5787750..5788733 (+) Length   327 a.a.
NCBI ID   WP_405790477.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00029     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5782750..5793733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG753_RS27170 (OG753_27135) - 5783102..5784028 (+) 927 WP_405790476.1 GNAT family N-acetyltransferase -
  OG753_RS27175 (OG753_27140) - 5784136..5785767 (+) 1632 WP_327264280.1 ABC transporter substrate-binding protein -
  OG753_RS27180 (OG753_27145) - 5785799..5786722 (+) 924 WP_327264281.1 ABC transporter permease -
  OG753_RS27185 (OG753_27150) - 5786715..5787737 (+) 1023 WP_383203170.1 ABC transporter permease -
  OG753_RS27190 (OG753_27155) amiE 5787750..5788733 (+) 984 WP_405790477.1 ABC transporter ATP-binding protein Regulator
  OG753_RS27195 (OG753_27160) - 5788726..5789826 (+) 1101 WP_405790478.1 ABC transporter ATP-binding protein -
  OG753_RS27200 (OG753_27165) - 5790178..5790372 (+) 195 WP_030012369.1 hypothetical protein -
  OG753_RS27205 (OG753_27170) mshB 5790397..5791293 (+) 897 WP_327264284.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  OG753_RS27210 (OG753_27175) - 5791290..5791673 (+) 384 WP_327264285.1 DUF6113 family protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35671.56 Da        Isoelectric Point: 6.9005

>NTDB_id=658153 OG753_RS27190 WP_405790477.1 5787750..5788733(+) (amiE) [Streptomyces sp. NBC_00029]
MLLEVRDLHVEFKTRDGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAVMGILDMPPGRIAGGEILFKGKDLLKMKE
EERRKVRGAEMAMIFQDALSSLNPVLSVGAQLGEMYEVHRGTSRKDAKRKAVELMDRVKIPAAKERVGDYPHQFSGGMRQ
RIMIAMALALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVEAAPVHE
IYKAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLVAIPPGCAFNPRCPMAQAVCRTDVPPLYRVTESPVERTSACHF
WKECLHG

Nucleotide


Download         Length: 984 bp        

>NTDB_id=658153 OG753_RS27190 WP_405790477.1 5787750..5788733(+) (amiE) [Streptomyces sp. NBC_00029]
ATGCTGCTCGAAGTCCGCGACCTGCACGTGGAATTCAAGACGCGCGACGGAGTCGCCAAGGCCGTCAACGGCGTCAACTA
CTCGGTGGCCGAGGGCGAGACGCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCGGTGACCGCCCAGGCCGTGATGG
GCATCCTCGACATGCCGCCGGGCCGCATCGCGGGCGGCGAGATCCTCTTCAAGGGCAAGGACCTCCTCAAGATGAAGGAG
GAGGAGCGCCGGAAGGTCCGCGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTCTCCTCCCTGAACCCGGTCCTGAG
CGTGGGTGCGCAGCTCGGCGAGATGTACGAGGTCCACCGCGGGACGTCCCGCAAGGACGCCAAGCGCAAGGCCGTCGAGC
TGATGGACCGGGTGAAGATCCCGGCGGCGAAGGAGCGGGTGGGGGACTACCCGCACCAGTTCTCGGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCACTGGCCCTGGAGCCCTCGCTGATCATCGCGGACGAGCCGACGACGGCCCTGGACGTCAC
CGTCCAGGCCCAGGTGATGGACCTGCTGGCCGAGCTGCAGCGCGAGCTGAACATGGGCCTCATCCTGATCACCCACGACC
TGGGCGTGGTTGCCGATGTCGCCGACAAGATCGCGGTCATGTACGCGGGCCGGATCGTCGAGGCGGCCCCCGTCCACGAG
ATCTACAAGGCGCCCGCGCACCCGTACACGCGCGGCCTCCTGGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCCATCAAGGGCCTGCCGCCGAACCTGGTGGCCATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGTCCGATGGCGC
AGGCGGTGTGCCGCACCGACGTCCCCCCGCTGTACCGGGTGACCGAGTCCCCGGTGGAGCGGACCAGCGCCTGCCACTTC
TGGAAGGAGTGCCTCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.812

97.859

0.468
  amiE Streptococcus thermophilus LMG 18311

47.812

97.859

0.468
  amiE Streptococcus thermophilus LMD-9

47.812

97.859

0.468
  oppD Streptococcus mutans UA159

47.573

94.495

0.45