Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG438_RS31160 Genome accession   NZ_CP108291
Coordinates   6951826..6953559 (-) Length   577 a.a.
NCBI ID   WP_405927542.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00035     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6946826..6958559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG438_RS31150 (OG438_31140) - 6948300..6949643 (+) 1344 WP_405925713.1 RNA polymerase sigma factor -
  OG438_RS31155 (OG438_31145) rcrQ 6949898..6951826 (-) 1929 WP_326723276.1 ABC transporter ATP-binding protein Regulator
  OG438_RS31160 (OG438_31150) rcrP 6951826..6953559 (-) 1734 WP_405927542.1 ABC transporter ATP-binding protein Regulator
  OG438_RS31165 (OG438_31155) - 6953709..6955163 (-) 1455 WP_326723277.1 FGGY family carbohydrate kinase -
  OG438_RS31170 (OG438_31160) - 6955250..6955555 (-) 306 WP_326723278.1 YtxH domain-containing protein -
  OG438_RS31190 (OG438_31180) - 6956194..6956457 (-) 264 WP_405925714.1 GntR family transcriptional regulator -
  OG438_RS31195 (OG438_31185) - 6957170..6957847 (+) 678 WP_405925715.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62548.80 Da        Isoelectric Point: 6.5101

>NTDB_id=658075 OG438_RS31160 WP_405927542.1 6951826..6953559(-) (rcrP) [Streptomyces sp. NBC_00035]
MLIRLLRTYLRPYKKPIVLLVLLQLLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIAISLAQVVCNIGAVYYGA
RTASAVGRDIRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGLGVTLIIRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRKANADLTEVSLGTGRYLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTDSSVVP
PTAPVVELRRHGHLEIRGGGFRYPGAEEPVLTAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPRLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYKTDAMLRAALAAETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=658075 OG438_RS31160 WP_405927542.1 6951826..6953559(-) (rcrP) [Streptomyces sp. NBC_00035]
GTGCTCATACGACTACTGCGTACGTACCTCCGTCCGTACAAGAAACCCATCGTCCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTCAACGCGCACATCATTGACAACGGTGTCGTGAAGGGCGACACGGGATACA
TCCTGTCCTTCGGCGCCGTGATGATCGCGATCTCGCTGGCGCAGGTCGTCTGCAACATCGGCGCCGTCTACTACGGCGCC
CGTACGGCGTCGGCCGTCGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTCCAGTCCTTCTCCGCGCGCGAGGTCGG
CCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGTGTGGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCCGTGGTGCCGGTACTCGGCCTCGGTGTGACCCTGATCATCCGGCGGCTGCGGCCGCTGTTCCGCTCCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCCGCGCCTTCGTACGGGACG
ACTACGAGAAGGAGCGCTTCCGGAAGGCGAACGCCGATCTGACCGAGGTGTCGCTGGGCACCGGGCGGTACCTGGCACTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTGTCCTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
GGGCATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGACACCGACAGCAGTGTGGTGCCG
CCGACCGCACCCGTCGTGGAGCTGCGTCGCCACGGCCACCTGGAGATCCGGGGCGGCGGGTTCCGTTACCCGGGTGCCGA
GGAGCCGGTGCTGACGGCCGTCGACCTGGTGGCGCGGCCGGGTGAGACGACCGCCGTGATCGGGTCAACGGGCAGTGGCA
AGTCGACGCTTCTCGGGCTCGTCCCCCGGCTGTTCGACGCCACCGACGGCGAGGTGCTCGTCGACGGCGTGGACGTGGCG
ACCATCGAGCCGAGACTGCTCGCCAAGACGGTCGGACTCGTCCCGCAGAAGCCGTATCTCTTCGCGGGCACGGTGGCGAC
GAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGGTTCG
TGGAGGGCCTGGAGAACGGGCTCGACTCCCCCATCGCACAGGGCGGCACGAATGTGTCCGGTGGTCAGCGGCAGCGTCTC
GCGATCGCCCGCACCCTCGTACAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTCGACTACAAGACCGA
CGCCATGCTCCGCGCGGCGCTCGCCGCGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGGCGGCACCACGAACTGATGGCCGGCAAC
GAGACATACCGGGAGATCGTCCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.034

100

0.404