Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG438_RS31155 Genome accession   NZ_CP108291
Coordinates   6949898..6951826 (-) Length   642 a.a.
NCBI ID   WP_326723276.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00035     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6944898..6956826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG438_RS31140 (OG438_31130) - 6944906..6946171 (+) 1266 WP_266462855.1 NAD(P)/FAD-dependent oxidoreductase -
  OG438_RS31145 (OG438_31135) dnaG 6946218..6948125 (+) 1908 WP_326723274.1 DNA primase -
  OG438_RS31150 (OG438_31140) - 6948300..6949643 (+) 1344 WP_405925713.1 RNA polymerase sigma factor -
  OG438_RS31155 (OG438_31145) rcrQ 6949898..6951826 (-) 1929 WP_326723276.1 ABC transporter ATP-binding protein Regulator
  OG438_RS31160 (OG438_31150) rcrP 6951826..6953559 (-) 1734 WP_405927542.1 ABC transporter ATP-binding protein Regulator
  OG438_RS31165 (OG438_31155) - 6953709..6955163 (-) 1455 WP_326723277.1 FGGY family carbohydrate kinase -
  OG438_RS31170 (OG438_31160) - 6955250..6955555 (-) 306 WP_326723278.1 YtxH domain-containing protein -
  OG438_RS31190 (OG438_31180) - 6956194..6956457 (-) 264 WP_405925714.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69367.63 Da        Isoelectric Point: 5.3011

>NTDB_id=658074 OG438_RS31155 WP_326723276.1 6949898..6951826(-) (rcrQ) [Streptomyces sp. NBC_00035]
MAGPMGRMMAGGGPDQRSMDFKGSGKRLLSQFKPERGTMYAMLSLGVVSVALSVLGPKILGRATDLVFAGIIGREMPAGQ
TKAEALEAMRARGDGGTADMLSGTDFTPGKGIDFGAVGNVLLLALCAFVVAGVLMAVSTRLSNRAINMTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALVTVPLSFFIATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHNLVKVFGRQDESAAQFAEQNEQLYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPALRPDELRGRVALE
NVSFRYDPDKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAAMSRDELRDGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEASRAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADSILVMENGSIVEQGAHAELLASDGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=658074 OG438_RS31155 WP_326723276.1 6949898..6951826(-) (rcrQ) [Streptomyces sp. NBC_00035]
ATGGCCGGGCCTATGGGGCGGATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGATGGATTTCAAGGGGTCGGGCAAACG
GCTCCTCTCCCAGTTCAAGCCCGAGCGCGGCACGATGTACGCGATGCTCTCCCTCGGGGTGGTCAGCGTGGCGCTGTCCG
TGCTGGGCCCGAAGATCCTGGGCAGGGCGACCGACCTGGTCTTCGCCGGGATCATCGGACGGGAGATGCCCGCCGGCCAG
ACGAAGGCCGAGGCCCTCGAGGCGATGCGGGCACGCGGCGACGGCGGCACGGCCGACATGCTCTCGGGTACGGACTTCAC
TCCGGGCAAGGGCATCGACTTCGGCGCCGTCGGGAACGTACTGCTGCTCGCGCTCTGTGCGTTCGTGGTGGCCGGCGTGC
TGATGGCGGTGTCCACCCGGCTCTCGAACCGGGCGATCAACATGACCGTCTACCGGATGCGCGAGGACCTGCAGGCCAAG
CTGTCACGCCTGCCGCTGTCCTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTGGTCAACTCCCTCCTCACCATCGTGGGCGTGCTCGCGATGATGT
TCTGGGTCTCGCCGCTCCTCGCCCTGGTCGCGCTGGTCACCGTGCCGCTGTCCTTCTTCATCGCCACGCGGGTCGGCAAG
CGTTCGCAGCCGCACTTCGTCCAGCAGTGGCGGACCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTGTTCGGGCGGCAGGATGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGCAGTTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTGGCG
GTGGTGGGCGGGCTGCGGGTCGCGTCCGGGTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTGACCCAGGTCGCCTCCATGGCGAACCTCGTGCAGTCGGGCGTGGCTTCCGCCGAGCGGATCTTCGAGC
TCCTCGACGCGGACGAGCAGGAGGCCGATCCGGTTCCGGCGCTCCGTCCCGACGAGCTGCGGGGGCGGGTGGCGCTGGAG
AACGTGTCCTTCCGGTACGACCCCGACAAGCCGCTCATCGAGGATCTGTCGCTGAAGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTCCTCATGCGGTTCTACGAGGTCACCGGGGGGCGGA
TCACACTCGACGGGGTCGACATCGCCGCCATGTCCCGGGACGAACTCCGGGACGGCATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGGACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGACGTCACCCGGGGCGAGATCGAGGAAGC
CTCGCGGGCCGCCCACGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACACCGTGATCGACGACGAGGGGACGG
GGGTGAGCGCGGGTGAGAAGCAGCTCATCACCATCGCTCGGGCGTTCCTGTCGGATCCGGTGATTCTGGTCCTTGACGAG
GCGACGTCTTCGGTCGACACGCGGACGGAGGTCCTGATCCAGAAGGCGATGGCGAAGCTTGCGCATGGGCGTACGTCGTT
CGTGATCGCGCATCGCCTGTCGACGATCCGGGATGCGGACTCCATCCTCGTGATGGAGAACGGGTCGATCGTGGAGCAGG
GCGCGCACGCGGAGCTGCTTGCCTCGGACGGGGCGTACGCGCGCCTGTACAAGGCCCAGTTCGCGCAGGCGGTGGCTGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(44-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.097

96.573

0.407