Detailed information NTG0065807

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MS6_RS02035
• Genome accession: NZ_AP014524
• Coordinates: 414510..415517 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae MS6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 409510..420517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MS6_RS02000 (MS6_0353)	ftsB	409561..409845 (+)	285	WP_001263189.1	cell division protein FtsB	-
MS6_RS02005 (MS6_0354)	ispD	409842..410540 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MS6_RS02010 (MS6_0355)	ispF	410537..411013 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MS6_RS02015 (MS6_0356)	truD	411043..412128 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
MS6_RS02020 (MS6_0357)	surE	412130..412882 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
MS6_RS02025 (MS6_0358)	-	412875..413501 (+)	627	WP_041047543.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
MS6_RS02030 (MS6_0359)	nlpD	413501..414436 (+)	936	WP_041047545.1	murein hydrolase activator NlpD	-
MS6_RS02035 (MS6_0360)	rpoS	414510..415517 (+)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
MS6_RS02040 (MS6_0361)	mutS	415613..418201 (-)	2589	WP_041049133.1	DNA mismatch repair protein MutS	-
MS6_RS02045 (MS6_0362)	cysM	418469..419356 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=65807 MS6_RS02035 WP_000116735.1 414510..415517(+) (rpoS) [Vibrio cholerae MS6]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=65807 MS6_RS02035 WP_000116735.1 414510..415517(+) (rpoS) [Vibrio cholerae MS6]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGACGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTGGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997