Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKD41_RS11330 Genome accession   NZ_CP092487
Coordinates   2793474..2794832 (-) Length   452 a.a.
NCBI ID   WP_240242405.1    Uniprot ID   -
Organism   Lutibacter sp. A64     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2788474..2799832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD41_RS11310 (MKD41_11310) - 2789360..2789818 (-) 459 WP_240242401.1 DUF4296 domain-containing protein -
  MKD41_RS11315 (MKD41_11315) - 2789811..2791160 (-) 1350 WP_240242402.1 dihydroorotase -
  MKD41_RS11320 (MKD41_11320) - 2791179..2791898 (-) 720 WP_240242403.1 polyprenol monophosphomannose synthase -
  MKD41_RS16430 - 2791968..2792630 (+) 663 WP_371824262.1 DUF4271 domain-containing protein -
  MKD41_RS11325 (MKD41_11325) - 2792648..2793394 (+) 747 WP_240242404.1 uroporphyrinogen-III synthase -
  MKD41_RS11330 (MKD41_11330) radA 2793474..2794832 (-) 1359 WP_240242405.1 DNA repair protein RadA Machinery gene
  MKD41_RS11335 (MKD41_11335) - 2794873..2795853 (-) 981 WP_240242406.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  MKD41_RS11340 (MKD41_11340) panD 2795856..2796206 (-) 351 WP_240242407.1 aspartate 1-decarboxylase -
  MKD41_RS11345 (MKD41_11345) panC 2796245..2797084 (-) 840 WP_240242408.1 pantoate--beta-alanine ligase -
  MKD41_RS11350 (MKD41_11350) - 2797193..2797999 (+) 807 WP_240242409.1 glycogen/starch synthase -
  MKD41_RS11355 (MKD41_11355) - 2798029..2799561 (+) 1533 WP_240242410.1 DUF4270 domain-containing protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 50094.87 Da        Isoelectric Point: 7.9393

>NTDB_id=658029 MKD41_RS11330 WP_240242405.1 2793474..2794832(-) (radA) [Lutibacter sp. A64]
MAKVKTSFFCQNCGTQYAKWLGQCKACNEWNTIVEEVIQKEEKRNWKQTSSVKKTNKALKINEIVLDKEDRISTRNNELN
RVLGGGLVKGSMTLLGGEPGIGKSTLLLQIALAIPKKVLYVSGEESQSQIKMRAERLQIKNTNCLILTETNTQHIFKAIE
EVQPEVVVIDSIQTLYTEYIEASPGSISQIRETTAELIKFAKETATPVLLIGHITKDGNIAGPKILEHMVDVVLQFEGDR
NHTYRILRANKNRFGSTAELGIYEMQNIGLREVDNPSEILISQKEDNLSGTAIAATLEGMRSLMIEVQALVSTAVYGTPQ
RSATGYDLKRLNMLLAVLEKRAGFRLGAKDVFLNIAGGIKVDDPAIDLAVISAILSSNEDEAIPQDFCFAAEIGLAGEIR
AINRVEQRILEAEKLGFNKVFISKFNKISSKQYAIKIVKVAKVEDIYANLFA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=658029 MKD41_RS11330 WP_240242405.1 2793474..2794832(-) (radA) [Lutibacter sp. A64]
ATGGCAAAAGTAAAAACTTCTTTTTTCTGTCAGAATTGTGGTACGCAATATGCAAAATGGTTAGGGCAATGTAAAGCTTG
TAACGAGTGGAATACTATTGTTGAAGAGGTAATACAAAAGGAAGAAAAAAGAAATTGGAAACAAACATCTTCAGTTAAAA
AAACAAACAAAGCTCTAAAAATAAATGAAATTGTTTTAGATAAAGAAGATAGAATTTCTACACGAAACAATGAGTTAAAT
CGTGTTTTAGGTGGTGGTTTGGTAAAAGGATCTATGACGCTTTTAGGAGGTGAACCAGGTATTGGAAAATCTACCTTATT
ACTACAAATAGCATTGGCAATTCCTAAAAAAGTACTGTATGTATCCGGCGAAGAAAGTCAGAGCCAAATTAAAATGCGCG
CAGAACGGTTACAAATTAAAAATACAAATTGCCTAATTTTAACTGAAACAAATACGCAACATATTTTTAAAGCGATAGAA
GAAGTTCAGCCAGAAGTTGTTGTTATAGATTCTATTCAAACATTATATACCGAATATATTGAGGCTTCTCCAGGTTCAAT
CTCTCAAATTAGAGAAACTACTGCAGAGCTTATAAAATTTGCAAAAGAAACCGCTACTCCAGTATTATTAATTGGACATA
TTACCAAAGATGGAAATATTGCTGGACCAAAAATTTTGGAACATATGGTAGATGTTGTACTGCAATTTGAAGGTGATAGA
AACCATACCTATAGAATTTTACGAGCCAATAAAAACCGTTTTGGTTCTACAGCAGAACTTGGTATTTACGAAATGCAAAA
TATTGGTTTAAGAGAGGTTGATAATCCTTCAGAAATATTAATTTCTCAAAAAGAAGATAATTTAAGCGGTACTGCAATTG
CGGCAACTTTAGAAGGTATGCGCTCTTTAATGATAGAAGTTCAGGCATTGGTAAGTACAGCAGTTTATGGTACGCCACAG
CGCTCTGCAACGGGTTACGATCTTAAAAGGTTGAATATGTTATTAGCCGTTTTAGAAAAACGTGCAGGTTTTAGATTGGG
AGCAAAAGATGTTTTTTTAAATATTGCCGGTGGTATTAAAGTAGATGATCCTGCAATAGATTTAGCAGTTATTAGCGCAA
TATTATCCTCTAATGAAGATGAAGCTATTCCACAAGATTTTTGTTTTGCAGCAGAAATTGGATTAGCGGGTGAAATTAGA
GCAATAAATAGAGTAGAGCAGCGTATTTTAGAAGCTGAAAAGCTAGGTTTTAATAAGGTATTTATTTCAAAATTTAATAA
AATAAGCTCAAAACAATACGCCATTAAAATTGTAAAAGTTGCAAAGGTTGAAGATATTTATGCTAATCTATTCGCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-425)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.778

99.558

0.496
  radA Streptococcus mitis SK321

48.246

100

0.487
  radA Streptococcus mitis NCTC 12261

48.246

100

0.487
  radA Streptococcus pneumoniae Rx1

48.246

100

0.487
  radA Streptococcus pneumoniae D39

48.246

100

0.487
  radA Streptococcus pneumoniae R6

48.246

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.487