Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG438_RS12780 Genome accession   NZ_CP108291
Coordinates   2958619..2959815 (-) Length   398 a.a.
NCBI ID   WP_405923845.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00035     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2953619..2964815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG438_RS12760 (OG438_12735) - 2953926..2954264 (-) 339 WP_164411711.1 P-II family nitrogen regulator -
  OG438_RS12765 (OG438_12740) - 2954261..2955595 (-) 1335 WP_326720438.1 ammonium transporter -
  OG438_RS12770 (OG438_12745) - 2955935..2957407 (-) 1473 WP_405923844.1 hypothetical protein -
  OG438_RS12775 (OG438_12750) - 2957855..2958517 (+) 663 WP_371545488.1 bifunctional DNA primase/polymerase -
  OG438_RS12780 (OG438_12755) pilA 2958619..2959815 (-) 1197 WP_405923845.1 signal recognition particle-docking protein FtsY Machinery gene
  OG438_RS12785 (OG438_12760) - 2960007..2960978 (+) 972 WP_405923846.1 LLM class flavin-dependent oxidoreductase -
  OG438_RS12790 (OG438_12765) - 2961118..2962533 (-) 1416 WP_405923847.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 42272.47 Da        Isoelectric Point: 4.4518

>NTDB_id=658024 OG438_RS12780 WP_405923845.1 2958619..2959815(-) (pilA) [Streptomyces sp. NBC_00035]
MEIVILAVVIAVVVIGALGGLVVGSRKRKLPPPPPVAPDITAPPAEPHVGDEAETPREEPRRTIEEVDLPEAASAPVAVE
EPPALPEIEVPEPSAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVDRLRERVKV
LGTRTPDELRALLREELLQLLVPEFDRTVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLARVLVADGKHVLLGAADTFRAA
AADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLDEILL
VLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALIGE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=658024 OG438_RS12780 WP_405923845.1 2958619..2959815(-) (pilA) [Streptomyces sp. NBC_00035]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCGTCGTCGTGATCGGCGCGCTCGGCGGGCTGGTCGTCGGCAGCCGCAA
GCGGAAGCTGCCTCCGCCGCCCCCCGTCGCCCCCGACATCACCGCCCCTCCGGCCGAGCCGCACGTCGGCGACGAGGCCG
AGACGCCGCGGGAGGAACCGCGCCGCACGATAGAAGAGGTGGACCTCCCGGAGGCCGCCTCGGCTCCCGTCGCGGTCGAG
GAACCCCCGGCCCTTCCCGAGATCGAGGTCCCGGAGCCCTCCGCGGGGCGCCTGGTGCGCCTGCGCACCCGGCTCTCCCG
CTCGCAGAACGCGCTCGGCAAGGGGCTGCTCACGCTCCTCTCGCGCGAGCACCTCGACGAGGACACCTGGGAGGAGATCG
AGGACACGCTGCTCACCGCCGACGTCGGCGTACAGCCCACCCAGGAGCTGGTCGACCGGCTGCGTGAGCGTGTGAAGGTG
CTCGGCACCCGTACGCCGGACGAGCTGCGCGCTCTCCTGCGCGAGGAGCTGCTCCAGCTGCTCGTTCCCGAGTTCGACCG
CACGGTCAAGACCGACTCGAACCTCGACACCCCGGGCATCGTCATGGTCGTCGGGGTCAACGGAACCGGCAAGACGACCA
CCACGGGCAAGCTCGCCCGCGTGCTCGTGGCCGACGGCAAGCACGTCCTCTTGGGCGCCGCCGACACCTTCCGTGCCGCC
GCCGCCGACCAGCTGCAGACCTGGGGCGAGCGGGTGGGCGCCCGTACCGTGCGCGGTCCCGAGGGCGGCGACCCGGCCTC
GATCGCCTTCGACGCGGTCAAGGAGGGCATCGAGGAGGGCGCCGACGTCGTCCTCATCGACACCGCGGGCCGGCTGCACA
CGAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGCGCCACTGGACGAGATCCTGCTC
GTCCTCGACGCCACCACCGGGCAGAACGGTCTCGTCCAGGCCCGTGTCTTCGCCGAGGTCGTCGACATTACCGGCATCGT
GCTGACCAAGCTCGACGGGACGGCCAAGGGCGGCATCGTGATCGCGGTGCAGCGCGAGCTGGGCGTGCCGGTCAAGCTGG
TGGGTCTGGGCGAGGGGGCGGACGATCTGGCGCCGTTCGAGCCGGAGGCGTTCGTTGACGCCCTTATCGGAGAGTAG

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(200-396)

SRP54-type protein, helical bundle domain (SRP54_N)

(112-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.286

87.94

0.372