Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG374_RS30000 Genome accession   NZ_CP108287
Coordinates   6442528..6443322 (-) Length   264 a.a.
NCBI ID   WP_202199388.1    Uniprot ID   A0ABQ3TA89
Organism   Streptomyces sp. NBC_00040     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6437528..6448322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG374_RS29985 (OG374_29835) - 6437700..6438419 (+) 720 WP_252309918.1 GNAT family N-acetyltransferase -
  OG374_RS29990 (OG374_29840) - 6438520..6440412 (+) 1893 WP_202199390.1 IucA/IucC family siderophore biosynthesis protein -
  OG374_RS29995 (OG374_29845) - 6440465..6442435 (+) 1971 WP_202199389.1 ATP-dependent DNA helicase -
  OG374_RS30000 (OG374_29850) dinR/lexA 6442528..6443322 (-) 795 WP_202199388.1 transcriptional repressor LexA Regulator
  OG374_RS30005 (OG374_29855) nrdR 6443792..6444304 (+) 513 WP_202199387.1 transcriptional regulator NrdR -
  OG374_RS30010 (OG374_29860) - 6444449..6447337 (+) 2889 WP_398430103.1 vitamin B12-dependent ribonucleotide reductase -
  OG374_RS30015 (OG374_29865) - 6447440..6447835 (-) 396 WP_398430105.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28572.37 Da        Isoelectric Point: 7.4238

>NTDB_id=657984 OG374_RS30000 WP_202199388.1 6442528..6443322(-) (dinR/lexA) [Streptomyces sp. NBC_00040]
MTTTADSAAITAQNRSQSRLDPVHAMNDANLNPDAEPVVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=657984 OG374_RS30000 WP_202199388.1 6442528..6443322(-) (dinR/lexA) [Streptomyces sp. NBC_00040]
GTGACCACCACCGCAGACAGTGCCGCCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGATCCGGTGCATGCCATGAA
CGACGCAAACCTGAACCCGGATGCGGAGCCCGTAGTACGCCCCGCACGCTCGCTGCCAGGTCGACCTCCAGGCATCCGCG
CCGACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCCGTGCAGCGGCGGGGCTACCCG
CCGTCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACCTCGTCGGTCGCGCACCAGCTGATGGCACTCGAACG
CAAGGGCTTCCTCCGCCGCGACCCGCACCGCCCCCGGGCCTACGAGGTGCGCGGCTCCGATCAGCCGAGCTCGCAGCCCA
CGGACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTCTTCCCGCTCCCCCGGCAGCTCGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCCATCTGCGACGGCGACTGGGTCACGGTCCGTCGCCAGCCGGTCGCGGAGAACGGCGACATCG
TCGCCGCGATGCTCGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAAC
GCCGCCTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375