Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG374_RS29125 Genome accession   NZ_CP108287
Coordinates   6232003..6233217 (+) Length   404 a.a.
NCBI ID   WP_202199529.1    Uniprot ID   A0ABQ3TAS2
Organism   Streptomyces sp. NBC_00040     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6227003..6238217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG374_RS29110 (OG374_28965) - 6227875..6229305 (+) 1431 WP_202199532.1 sugar porter family MFS transporter -
  OG374_RS29115 (OG374_28970) - 6229347..6230333 (-) 987 WP_202199531.1 LLM class flavin-dependent oxidoreductase -
  OG374_RS29120 (OG374_28975) - 6230398..6231858 (-) 1461 WP_202199530.1 cytosine permease -
  OG374_RS29125 (OG374_28980) pilA 6232003..6233217 (+) 1215 WP_202199529.1 signal recognition particle-docking protein FtsY Machinery gene
  OG374_RS29130 (OG374_28985) - 6233373..6234041 (-) 669 WP_202199528.1 bifunctional DNA primase/polymerase -
  OG374_RS29135 (OG374_28990) - 6234462..6235958 (+) 1497 WP_202199527.1 hypothetical protein -
  OG374_RS29140 (OG374_28995) - 6236339..6237682 (+) 1344 WP_202199526.1 ammonium transporter -
  OG374_RS29145 (OG374_29000) - 6237679..6238017 (+) 339 WP_030009357.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 42318.53 Da        Isoelectric Point: 4.4268

>NTDB_id=657979 OG374_RS29125 WP_202199529.1 6232003..6233217(+) (pilA) [Streptomyces sp. NBC_00040]
MDILILAVVIALVAVGVISGLVVSSRKKKQLPPPAPPSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVGLPEAEAPAAA
PVVVEPEVPAAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLVADVGVVPTQELVDRL
RERVKVLGTRTPADLRALLKEELLTLVGTDFDRAVKTESGEDTPGVIMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAA
DTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGP
LDEVLLVLDATTGQNGLTQARVFAEVVAITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVDA
LIGD

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=657979 OG374_RS29125 WP_202199529.1 6232003..6233217(+) (pilA) [Streptomyces sp. NBC_00040]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGTGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCGCCGGCACCGCCGAGCACGCCGACCATCACTGCCCCGCCTGCCGAGCCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCGCGCCGCACGATCGAGGAGGTCGGGCTCCCGGAGGCCGAGGCTCCCGCCGCGGCG
CCCGTCGTCGTCGAGCCCGAGGTCCCGGCCGCGCCCGAGATCGAGGTACCGGAGCCCACCGCCGGGCGCCTGGTCCGGCT
GCGTGCCCGACTCGCCCGGTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTGCTCTCCCGGGAGCACCTCGACGAGG
ACACCTGGGAGGAGATCGAGGAGACCCTCCTCGTCGCCGACGTCGGCGTCGTCCCGACCCAGGAGCTCGTGGACCGGCTC
CGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCCGCGGACCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGACCCTGGT
CGGCACCGACTTCGACCGCGCCGTGAAGACGGAGAGCGGCGAGGACACCCCCGGCGTGATCATGGTCGTCGGCGTCAACG
GCACCGGTAAGACCACCACCACCGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGTGTGGTGCTCGGCGCGGCC
GACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGTACCGTGCGCGGTCCCGA
GGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGTGCCGACGTGGTGCTCATCGACA
CCGCGGGCCGCCTGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGTCCG
CTGGACGAGGTCCTGCTGGTCCTGGACGCCACCACCGGCCAGAACGGCCTGACCCAGGCCCGCGTCTTCGCCGAGGTCGT
GGCCATCACCGGCATCGTTCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAACTGG
GCGTGCCGGTCAAGCTCATCGGCCTCGGTGAGGGCCCCGACGACCTGGCGCCCTTCGAGCCGGAGGCGTTCGTGGACGCC
CTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(118-183)

SRP54-type protein, GTPase domain (SRP54)

(205-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.709

100

0.406