NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	MJ598_RS12680	Genome accession	NZ_CP092481
Coordinates	2785987..2787348 (-)	Length	453 a.a.
NCBI ID	WP_003479244.1	Uniprot ID	A0A127ELS8
Organism	Clostridium perfringens strain Qinghai-1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2780987..2792348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MJ598_RS12660	ispD	2782359..2783036 (-)	678	WP_240259511.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MJ598_RS12665	-	2783050..2784156 (-)	1107	WP_096516926.1	PIN/TRAM domain-containing protein	-
MJ598_RS12670	-	2784468..2784869 (+)	402	WP_221373261.1	DUF1573 domain-containing protein	-
MJ598_RS12675	disA	2784903..2785967 (-)	1065	WP_003452233.1	DNA integrity scanning diadenylate cyclase DisA	-
MJ598_RS12680	radA	2785987..2787348 (-)	1362	WP_003479244.1	DNA repair protein RadA	Machinery gene
MJ598_RS12685	nagB	2787600..2788328 (-)	729	WP_096516928.1	glucosamine-6-phosphate deaminase	-
MJ598_RS12690	-	2788325..2789047 (-)	723	WP_126964448.1	GntR family transcriptional regulator	-
MJ598_RS12695	-	2789247..2789411 (+)	165	WP_164812340.1	hypothetical protein	-
MJ598_RS12700	-	2789505..2789732 (+)	228	WP_003452255.1	glutaredoxin family protein	-
MJ598_RS12705	-	2789855..2791303 (-)	1449	WP_057232166.1	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	-
MJ598_RS12710	-	2791320..2791553 (-)	234	WP_003452243.1	glutaredoxin family protein	-

Sequence

Protein

Download Length: 453 a.a. Molecular weight: 49820.54 Da Isoelectric Point: 6.5314

                                >NTDB_id=657975 MJ598_RS12680 WP_003479244.1 2785987..2787348(-) (radA) [Clostridium perfringens strain Qinghai-1]

MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV

LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI

DKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE

RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP

RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGE

IRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide

Download Length: 1362 bp

                                >NTDB_id=657975 MJ598_RS12680 WP_003479244.1 2785987..2787348(-) (radA) [Clostridium perfringens strain Qinghai-1]

GTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAAGTGGATGGGTAAATGTCCAGAATG

TAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTTCTCCTAAGGTTGAAAGACAAATTG

GTGAGCTTAAAAAGATAAAAGAAATTAAGTCAGGTGAAAAGGAAAGATATGATACTGGAATTGGTGAATTAAATAGAGTA

TTAGGTGGAGGACTTGTTAAGGGGTCACTTACACTTATATCTGGTGATCCTGGAATAGGTAAATCTACACTTCTTTTACA

AACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGGGAAGAATCAGAAGAACAAATAAAAATAA

GAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAATCTTGATGTAATAGAAGCATATATA

GATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGAAACAGTTTCTTCAGCACCAGGAAG

TGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAGGGAAAAAATATTCCTTTATTTATAGTTGCTC

ATGTTACTAAGCAAGGGGATTTAGCAGGACCAAGAGTATTAGAACACATGGTGGATACTGTATTATCCTTTGAAGGGGAA

AGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGCTGAAATAGGTGTTTTTGAAATGCG

TGGAGAGGGATTAATGCAGGTTTATGATCCATCTAGCATGTTTTTAGAGGACACTAGTTTTAATCAAGAAGGATCAGTTG

TAATTGGAGTTATGGAAGGAACTAGACCTATTCTTGTAGAAATACAATCATTAGCATCTGAAACAAAAGCAGTTATGCCT

AGAAGAACTTCTGTGGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATTAGAAAAGAAATTAAGAGTTCCTTT

TTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTACAGCAGATTTAGGAATTGCTATTT

CACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGCTTAGAAAAATTAGTTGTTGTAGGCGAGGTTGGGTTAACAGGTGAA

ATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATTTTTAAATGCAGTTGTTCCTTATAG

AAGCTTAGAAAAATTAAAGGGAAGTAAATTAAACCTTATAGGAGTAAAAACTGTAAGGGAAGCAATAGGAAAGATATTTT

AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-426)

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A127ELS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.11	100	0.501
radA	Streptococcus pneumoniae Rx1	47.577	100	0.477
radA	Streptococcus pneumoniae D39	47.577	100	0.477
radA	Streptococcus pneumoniae R6	47.577	100	0.477
radA	Streptococcus pneumoniae TIGR4	47.577	100	0.477
radA	Streptococcus mitis SK321	47.357	100	0.475
radA	Streptococcus mitis NCTC 12261	47.357	100	0.475

Detailed information NTG0657975