Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHL31_RS10180 Genome accession   NZ_CP092480
Coordinates   2492638..2493996 (-) Length   452 a.a.
NCBI ID   WP_240225847.1    Uniprot ID   -
Organism   Lutibacter sp. A80     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2487638..2498996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHL31_RS10155 (MHL31_10155) - 2488537..2488995 (-) 459 WP_240225842.1 DUF4296 domain-containing protein -
  MHL31_RS10160 (MHL31_10160) - 2488988..2490337 (-) 1350 WP_240225843.1 dihydroorotase -
  MHL31_RS10165 (MHL31_10165) - 2490355..2491074 (-) 720 WP_240225844.1 polyprenol monophosphomannose synthase -
  MHL31_RS10170 (MHL31_10170) - 2491144..2491806 (+) 663 WP_240225845.1 DUF4271 domain-containing protein -
  MHL31_RS10175 (MHL31_10175) - 2491824..2492570 (+) 747 WP_240225846.1 uroporphyrinogen-III synthase -
  MHL31_RS10180 (MHL31_10180) radA 2492638..2493996 (-) 1359 WP_240225847.1 DNA repair protein RadA Machinery gene
  MHL31_RS10185 (MHL31_10185) - 2494181..2495161 (-) 981 WP_240225848.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  MHL31_RS10190 (MHL31_10190) panD 2495164..2495514 (-) 351 WP_240225849.1 aspartate 1-decarboxylase -
  MHL31_RS10195 (MHL31_10195) panC 2495553..2496392 (-) 840 WP_240225850.1 pantoate--beta-alanine ligase -
  MHL31_RS10200 (MHL31_10200) - 2496501..2497307 (+) 807 WP_240225851.1 glycogen/starch synthase -
  MHL31_RS10205 (MHL31_10205) - 2497337..2498875 (+) 1539 WP_240225852.1 DUF4270 domain-containing protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 50120.87 Da        Isoelectric Point: 7.6102

>NTDB_id=657959 MHL31_RS10180 WP_240225847.1 2492638..2493996(-) (radA) [Lutibacter sp. A80]
MAKVKTTFFCQNCGTQYAKWLGQCKACNEWNTIVEEVVQKEEKRNWKQTPAVKKSNKALKINEIVLDKEDRISTRNNELN
RVLGGGLVRGSMTLLGGEPGIGKSTLLLQIALAIPKKVLYVSGEESQSQIKMRAERLQINNTNCLILTETNTQHIFKAIE
EVQPEVVVIDSIQTLYTEYIEASPGSISQIRETTAELIKFAKETATPVLLIGHITKDGNIAGPKILEHMVDVVLQFEGDR
NHTYRILRANKNRFGSTAELGIYEMQNIGLREVDNPSEILISQKEDDLSGTAIAATLEGMRSLMIEVQALVSTAVYGTPQ
RSATGYDLKRLNMLLAVLEKRAGFRLGAKDVFLNIAGGIKVDDPAIDLAVISAILSSNEDEAIPQDFCFAAEIGLAGEIR
AINRVEQRILEAEKLGFTKVFISKFNKISSKSYRIKIVKVAKVEDIYANLFA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=657959 MHL31_RS10180 WP_240225847.1 2492638..2493996(-) (radA) [Lutibacter sp. A80]
ATGGCAAAAGTTAAAACTACTTTTTTCTGTCAGAATTGTGGTACACAATATGCAAAATGGTTAGGGCAATGTAAGGCTTG
TAACGAGTGGAATACTATTGTAGAAGAAGTTGTTCAAAAGGAAGAAAAGCGAAATTGGAAACAAACACCTGCAGTTAAAA
AAAGTAATAAAGCTTTAAAAATTAATGAAATTGTTTTAGATAAAGAAGATCGAATTTCTACAAGAAATAACGAACTAAAT
AGGGTTTTAGGAGGTGGACTGGTAAGAGGTTCTATGACGCTTTTAGGAGGGGAGCCAGGTATTGGAAAATCTACCTTATT
ATTGCAAATTGCATTGGCAATTCCTAAAAAAGTTTTATACGTTTCTGGTGAAGAAAGTCAATCACAAATTAAAATGCGTG
CAGAACGCTTGCAAATTAATAATACGAATTGTTTAATTTTAACTGAAACAAACACCCAACATATTTTTAAAGCTATTGAA
GAGGTACAGCCAGAAGTTGTTGTAATAGATTCTATTCAAACATTATATACCGAATATATTGAAGCTTCACCAGGCTCCAT
ATCGCAAATTAGAGAAACTACAGCAGAGCTTATTAAATTTGCTAAAGAAACAGCAACTCCAGTATTATTAATAGGGCATA
TAACTAAAGATGGAAACATTGCAGGTCCAAAAATTTTGGAGCATATGGTAGATGTTGTACTACAATTTGAAGGAGATAGA
AATCATACATATAGAATTTTACGCGCTAATAAAAATCGTTTTGGTTCTACAGCAGAATTAGGTATCTACGAAATGCAAAA
CATTGGTTTAAGAGAAGTAGATAATCCTTCAGAAATATTAATTTCTCAAAAAGAAGATGATTTAAGTGGTACTGCAATAG
CGGCAACTTTAGAAGGTATGCGTTCTTTAATGATAGAAGTACAAGCTTTGGTAAGTACAGCTGTTTATGGTACTCCGCAG
CGTTCTGCAACAGGTTACGATCTTAAAAGGTTAAATATGCTATTGGCCGTTTTAGAAAAACGAGCAGGTTTTAGATTGGG
AGCAAAAGATGTTTTCTTAAATATTGCGGGAGGAATTAAGGTAGATGATCCAGCAATTGATCTAGCGGTAATTAGTGCAA
TTTTATCTTCTAATGAAGATGAAGCAATTCCTCAAGATTTTTGTTTTGCAGCTGAAATAGGTTTAGCAGGTGAAATACGT
GCAATAAATAGAGTAGAACAACGTATTTTAGAAGCCGAAAAATTAGGGTTTACTAAAGTATTTATCTCAAAATTTAATAA
AATAAGCTCAAAATCATATAGAATTAAAATTGTAAAGGTTGCAAAGGTTGAAGATATTTATGCAAATTTATTTGCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(340-425)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.333

99.558

0.491
  radA Streptococcus mitis SK321

48.465

100

0.489
  radA Streptococcus mitis NCTC 12261

48.465

100

0.489
  radA Streptococcus pneumoniae Rx1

48.465

100

0.489
  radA Streptococcus pneumoniae D39

48.465

100

0.489
  radA Streptococcus pneumoniae R6

48.465

100

0.489
  radA Streptococcus pneumoniae TIGR4

48.465

100

0.489