Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG374_RS18570 Genome accession   NZ_CP108287
Coordinates   3996959..3997936 (-) Length   325 a.a.
NCBI ID   WP_405814689.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00040     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3991959..4002936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG374_RS18550 (OG374_18420) - 3992385..3993155 (+) 771 WP_202201175.1 DUF6227 family protein -
  OG374_RS18555 (OG374_18425) - 3993180..3994130 (-) 951 WP_202201174.1 1-phosphofructokinase family hexose kinase -
  OG374_RS18560 (OG374_18430) - 3994285..3995847 (-) 1563 WP_202201173.1 MFS transporter -
  OG374_RS18565 (OG374_18435) - 3995910..3996863 (+) 954 WP_202201172.1 YafY family protein -
  OG374_RS18570 (OG374_18440) rpoS 3996959..3997936 (-) 978 WP_405814689.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG374_RS18575 (OG374_18445) - 3998142..3998672 (+) 531 WP_202201170.1 GNAT family N-acetyltransferase -
  OG374_RS18580 (OG374_18450) - 3998777..3999421 (+) 645 WP_252309367.1 Uma2 family endonuclease -
  OG374_RS18585 (OG374_18455) - 3999418..4000188 (-) 771 WP_202201168.1 dioxygenase -
  OG374_RS18590 (OG374_18460) - 4000303..4001835 (-) 1533 WP_202201167.1 MFS transporter -
  OG374_RS18595 (OG374_18465) - 4001897..4002628 (-) 732 WP_202201166.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36521.17 Da        Isoelectric Point: 4.8878

>NTDB_id=657951 OG374_RS18570 WP_405814689.1 3996959..3997936(-) (rpoS) [Streptomyces sp. NBC_00040]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGAIERDGDTPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPEHAEIAAELDSTERRVGDVLDWARDPVSLNMSVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=657951 OG374_RS18570 WP_405814689.1 3996959..3997936(-) (rpoS) [Streptomyces sp. NBC_00040]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCTCGCGCTGTGGGCGGGGAGATCGCAGACCGTGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAAGGAAGTGGAGCTCTCCCAGATCATCG
AGGCGGGCGTCTACGCCCAGCAGATCCTCGACGGCGCGATAGAGCGGGACGGGGACACCCCGGCCCGCGAGGAGCTGGAG
GCGCTGGCCGCCGAGGGCGAGCGCGCCAAGGAAGTCTTCATCCGCTCCAACCTCCGCCTCGTCGTCGCCGTCGCCCGGCG
CTATCCCCGCAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGGTCCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACTTACGCCACGTGGTGGATCCGGCAGGCGATCACCCGGTCCATCGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGGATCCGCCGCATCCAGCGTGAGTTCAACCGCGA
GAACGGCCGCGACCCGGAGCACGCCGAGATCGCCGCCGAGCTGGACTCGACTGAGAGGCGCGTGGGCGACGTACTGGACT
GGGCCCGCGACCCGGTCAGCCTCAACATGTCCGTCGACGACGACGGCGACACGCAGTTCGGCGACCTCCTGGAGGACACC
TCCGCGATCTCGCCCGAGCAGTCCGTGCTCTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACCA
GCGCACGGCGTCGATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTGAAGCGGATGGCGCGCGACACCGGC
TTCGACGCCGTGGCCTAG

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366