Detailed information NTG0065793

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: NY40_RS05685
• Genome accession: NZ_AP014523
• Coordinates: 1147846..1149054 (-)
• Length: 402 a.a.
• NCBI ID: WP_041051082.1
• Uniprot ID: A0A060Q1M5
• Organism: Helicobacter pylori NY40
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1142846..1154054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NY40_RS05655 (NY40_1143)	-	1143516..1143791 (-)	276	WP_001278753.1	hypothetical protein	-
NY40_RS05660 (NY40_1144)	-	1143808..1144125 (-)	318	Protein_1104	hypothetical protein	-
NY40_RS05665 (NY40_1145)	-	1144128..1144358 (-)	231	Protein_1105	conjugal transfer protein TrbB	-
NY40_RS05670 (NY40_1146)	-	1144363..1144638 (-)	276	WP_001278753.1	hypothetical protein	-
NY40_RS05675 (NY40_1147)	-	1144655..1145608 (-)	954	WP_041051080.1	membrane protein	-
NY40_RS05680 (NY40_1148)	-	1145621..1147862 (-)	2242	Protein_1108	collagen-like protein	-
NY40_RS05685 (NY40_1150)	comB10	1147846..1149054 (-)	1209	WP_041051082.1	DNA type IV secretion system protein ComB10	Machinery gene
NY40_RS05690 (NY40_1151)	-	1149051..1150580 (-)	1530	Protein_1110	TrbG/VirB9 family P-type conjugative transfer protein	-
NY40_RS05695 (NY40_1152)	-	1150615..1150980 (-)	366	Protein_1111	hypothetical protein	-
NY40_RS09280	-	1150973..1151113 (-)	141	WP_000789929.1	hypothetical protein	-
NY40_RS05705 (NY40_1153)	-	1151110..1153775 (-)	2666	Protein_1113	VirB4 family type IV secretion/conjugal transfer ATPase	-
NY40_RS05710 (NY40_1155)	-	1153775..1154011 (-)	237	WP_039090975.1	hypothetical protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 44971.58 Da
• Isoelectric Point: 9.9650

>NTDB_id=65793 NY40_RS05685 WP_041051082.1 1147846..1149054(-) (comB10) [Helicobacter pylori NY40]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKYTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQLYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=65793 NY40_RS05685 WP_041051082.1 1147846..1149054(-) (comB10) [Helicobacter pylori NY40]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGTATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACTCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCAATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

3D structure

• AlphaFold DB: A0A060Q1M5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.284	98.01	0.512