Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MKD48_RS13960 Genome accession   NZ_CP092475
Coordinates   2789531..2790880 (+) Length   449 a.a.
NCBI ID   WP_000815638.1    Uniprot ID   Q53IL8
Organism   Staphylococcus aureus strain P5     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 2782680..2799295 2789531..2790880 within 0


Gene organization within MGE regions


Location: 2782680..2799295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS13930 - 2782680..2783177 (-) 498 WP_000051479.1 hypothetical protein -
  MKD48_RS13935 - 2783646..2784023 (-) 378 WP_000687965.1 hypothetical protein -
  MKD48_RS13940 - 2784449..2785381 (-) 933 WP_000364405.1 hypothetical protein -
  MKD48_RS13945 - 2785453..2787036 (-) 1584 WP_000271876.1 hypothetical protein -
  MKD48_RS13950 - 2787208..2787504 (+) 297 WP_000221966.1 single-stranded DNA-binding protein -
  MKD48_RS13955 - 2787504..2789297 (+) 1794 WP_248313604.1 DUF927 domain-containing protein -
  MKD48_RS13960 ccrA 2789531..2790880 (+) 1350 WP_000815638.1 recombinase family protein Machinery gene
  MKD48_RS13965 ccrB 2790902..2792530 (+) 1629 WP_001186608.1 recombinase family protein Machinery gene
  MKD48_RS13970 - 2793052..2793402 (+) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MKD48_RS13975 - 2793489..2793800 (+) 312 WP_000700851.1 DUF960 family protein -
  MKD48_RS13980 - 2793815..2794321 (+) 507 WP_001092188.1 DUF1643 domain-containing protein -
  MKD48_RS13985 - 2794373..2795980 (+) 1608 Protein_2721 IS1182 family transposase -
  MKD48_RS13990 - 2795971..2796231 (-) 261 WP_001549961.1 type I restriction enzyme endonuclease domain-containing protein -
  MKD48_RS13995 - 2796203..2797189 (-) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  MKD48_RS14000 mecA 2797286..2799295 (+) 2010 WP_078155820.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52636.23 Da        Isoelectric Point: 9.9639

>NTDB_id=657918 MKD48_RS13960 WP_000815638.1 2789531..2790880(+) (ccrA) [Staphylococcus aureus strain P5]
MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITQLIQQGQCDILCCYRLNRLHRN
LKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYDYH
HGTFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSI
YEQAQRLRSQKQTKQTSSDNQLKQKIKCPCCNATLTNMTIRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEV
CRDFYQNQRIYTKIKSAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHIIQ
NIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQTMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=657918 MKD48_RS13960 WP_000815638.1 2789531..2790880(+) (ccrA) [Staphylococcus aureus strain P5]
ATGAAACAAGTCATAGGCTATTTACGTCAAAGTACGATGAAACAACAATCTCTTGCAGCACAGAAACAAGCTATCGAAGC
AATAGCCGAAAAACATCATATTCAACATATCAACTTTTATAGCGACAAACAATCAGGTCGCAAAGATAATCGTAGTGGGT
ATCGACAAATAACACAATTAATTCAACAAGGACAGTGTGACATATTATGCTGTTATCGTCTTAATAGGTTGCATCGTAAT
CTGAAAAATGCATTAAAACTCATCAAATTATGTCAAACGTACCATGTTCATATCTTAAGCGTACATGATGGTTACTTTGA
TATGGATCAAGCTTTCGACCGACTCAAGCTTAATATCTTCATCAGTTTAGCCGAACTTGAATCGGATAACATTGGAGAAC
AAGTCAGAAATGGGCTTCAAGAAAAAGCAAAGCAAGGTCGATTGATTACAACACATGCACCTTTTGGTTACGATTATCAC
CACGGAACATTCATCATCAATCAAAATGAGTCACCAACGGTAAAGGCTGTATTCAATTATTACATTAAAGGCCATGGTTA
TAAGAAAATTGCACAGTTATTAGAAGAAGATAACACGTATATCAATCGACAACCCTATCAAGTTCGTAACATTATCATCA
ATCCTAATTATTGTGGTCGTGTCAACAATCAATATGGCCAATTCGACAATATGTTTCCTTCTATTGTTTCCACAAGTATA
TATGAGCAAGCGCAGAGACTTCGATCGCAAAAACAAACCAAACAGACATCTTCGGATAATCAACTCAAACAAAAAATCAA
ATGCCCATGTTGTAATGCAACACTTACAAATATGACCATTAGAAAAAAGAATCATACATTACGTTACTACGTCTGTCCTA
AAAACATGAATGCTTCACGCTTTGTCTGTGATTTTAAAGGCATCAATGCACAAACACTTGAAGATAAAGTATTAGAAGTG
TGCCGAGACTTTTATCAAAATCAACGCATCTACACAAAAATTAAAAGTGCGATTGACAAACGCATCAAAAGACAAAGAAA
CATAGAAAAACATCACACATTGACTCAAGAACAACTGATAGAAAAGTTGGCACAAGGCATCATTGATGCAGAAACGTTCA
GAGAGCAAACACAATCATTACGTCAACAACCGCAACGCACTACATCTATCAATGGGCATCAAATACAACACATCATTCAA
AATATTATTCAAAAACGTTTCACGTTAAACATATTGTACCCCTATATTGAAACCATTCACATTACGAAAGATAAAAATCT
TATAGGAATCTATTTCAAAAATGAACCACTCAATATTGTCAATCAAACCATGCAATCATCGATTGCATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q53IL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus N315

97.55

100

0.976
  ccrA Staphylococcus aureus COL

75.501

100

0.755