Detailed information NTG0657873

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: H8S51_RS14745
• Genome accession: NZ_CP092473
• Coordinates: 3196444..3197829 (-)
• Length: 461 a.a.
• NCBI ID: WP_241070756.1
• Uniprot ID: -
• Organism: Roseburia rectibacter strain NSJ-69
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3191444..3202829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H8S51_RS14745 (H8S51_014745)	radA	3196444..3197829 (-)	1386	WP_241070756.1	DNA repair protein RadA	Machinery gene
H8S51_RS14750 (H8S51_014750)	-	3197904..3201839 (-)	3936	WP_186899985.1	fibronectin type III domain-containing protein	-
H8S51_RS14755 (H8S51_014755)	-	3202074..3202484 (-)	411	WP_117921102.1	endosialidase	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50158.96 Da
• Isoelectric Point: 6.4991

>NTDB_id=657873 H8S51_RS14745 WP_241070756.1 3196444..3197829(-) (radA) [Roseburia rectibacter strain NSJ-69]
MPKGKTTVFFCQECGYESSKWMGQCPACREWNTFVEETIDKKSAAKDGRVAAKTTEAKTVPLSQIEMTQDKRMSTDMKEL
DRVLGGGIVQGSLVLVGGDPGIGKSTLLLQVCRNLSEKGVRVLYISGEESLQQIKIRAERIGTFGDSLTLLCETNLDTIK
AVIDREKPQIVIIDSIQTMYNEEVSSAPGSVSQVRESTGVFMQIAKGMGISIFIVGHVTKEGVVAGPRVLEHMVDTVLYF
EGDRHAAYRILRGVKNRFGSTNEIGVFEMRQNGLMEVENPSEYMLSGKPEGASGSVVACSMEGTRPILVEVQALVCHSNF
GIPRRTAAGTDFNRVNLLMAVLEKRLGLKLGDCDAYVNIAGGVKMNEPAIDLGIVLAIISSYRERPIDEKTICFGEVGLS
GEVRAVSMAEQRVTEAKKLGFNECILPQVSLDSMKDSGTVPKGIRLTGVRSVKDAMDAILK

Nucleotide

• Length: 1386 bp

>NTDB_id=657873 H8S51_RS14745 WP_241070756.1 3196444..3197829(-) (radA) [Roseburia rectibacter strain NSJ-69]
ATGCCAAAGGGAAAAACAACCGTATTTTTTTGCCAGGAGTGCGGCTACGAATCATCGAAATGGATGGGGCAGTGCCCGGC
ATGCAGGGAATGGAATACATTTGTTGAAGAGACGATCGACAAAAAAAGTGCAGCAAAAGACGGCAGGGTAGCAGCAAAAA
CAACGGAAGCGAAGACAGTTCCGCTCTCGCAGATCGAGATGACACAGGATAAGCGTATGTCGACAGACATGAAAGAACTT
GACCGTGTGCTTGGAGGTGGGATCGTGCAGGGTTCTTTAGTACTGGTAGGCGGTGATCCGGGAATCGGTAAATCAACGCT
GCTTTTACAGGTATGCCGGAATTTATCAGAGAAAGGTGTGCGTGTATTATATATATCAGGAGAGGAATCTCTGCAGCAGA
TCAAGATAAGGGCAGAACGTATCGGAACCTTTGGTGATTCGCTGACACTTTTATGTGAAACGAACTTAGACACGATCAAG
GCTGTGATCGACCGGGAAAAACCGCAGATCGTGATCATAGATTCCATACAGACTATGTATAATGAGGAAGTTTCCTCTGC
GCCGGGCAGCGTATCACAGGTGCGTGAGTCTACGGGAGTATTTATGCAGATCGCAAAGGGAATGGGGATTTCCATTTTTA
TCGTTGGTCACGTGACAAAAGAAGGAGTGGTTGCAGGACCGAGGGTCTTAGAACACATGGTGGATACCGTACTTTATTTT
GAAGGGGACAGACATGCGGCATACCGTATCCTGCGCGGCGTCAAAAACAGATTTGGTTCAACAAATGAAATCGGAGTGTT
TGAAATGAGGCAGAACGGACTGATGGAAGTGGAAAATCCTTCAGAATATATGCTGAGTGGAAAACCGGAAGGTGCATCCG
GTTCTGTGGTTGCATGTTCCATGGAAGGAACCAGACCGATTCTGGTGGAGGTACAGGCGTTAGTCTGCCACAGTAATTTT
GGCATTCCGCGGAGAACTGCAGCAGGTACAGATTTTAACAGGGTAAATCTCCTGATGGCTGTGCTTGAAAAAAGGCTGGG
ATTAAAACTGGGAGACTGTGATGCCTATGTTAATATTGCAGGCGGCGTAAAAATGAATGAGCCGGCAATCGATTTAGGAA
TTGTACTTGCTATCATCTCAAGCTACCGTGAAAGACCGATCGATGAAAAGACGATCTGTTTCGGAGAAGTGGGCCTGAGC
GGGGAAGTACGTGCAGTCAGCATGGCAGAGCAGCGTGTGACAGAAGCGAAAAAACTAGGATTTAATGAATGTATCCTGCC
ACAGGTCAGCCTGGATTCCATGAAAGATAGTGGAACTGTACCGAAAGGAATCCGCCTGACCGGTGTCAGATCAGTAAAAG
ATGCGATGGATGCGATACTGAAGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (66-222)

• Subunit ChlI of Mg-chelatase (ChlI) (346-428)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	57.974	100	0.584
radA	Streptococcus pneumoniae Rx1	53.913	99.783	0.538
radA	Streptococcus pneumoniae D39	53.913	99.783	0.538
radA	Streptococcus pneumoniae R6	53.913	99.783	0.538
radA	Streptococcus pneumoniae TIGR4	53.913	99.783	0.538
radA	Streptococcus mitis NCTC 12261	53.696	99.783	0.536
radA	Streptococcus mitis SK321	53.696	99.783	0.536