Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LY264_RS15970 Genome accession   NZ_CP092466
Coordinates   3254144..3254758 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain Cf7303     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3249144..3259758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY264_RS15955 (LY264_15950) helD 3249368..3251422 (-) 2055 WP_048227016.1 DNA helicase IV -
  LY264_RS15960 (LY264_15955) - 3251548..3251994 (+) 447 WP_003831998.1 YccF domain-containing protein -
  LY264_RS15965 (LY264_15960) yccS 3252013..3254166 (+) 2154 WP_003831997.1 YccS family putative transporter -
  LY264_RS15970 (LY264_15965) sxy/tfoX 3254144..3254758 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  LY264_RS15975 (LY264_15970) sulA 3254976..3255485 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  LY264_RS15980 (LY264_15975) ompA 3255843..3256901 (+) 1059 WP_048227017.1 porin OmpA -
  LY264_RS15985 (LY264_15980) matP 3256990..3257442 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  LY264_RS15990 (LY264_15985) - 3257628..3259388 (+) 1761 WP_048227018.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=657843 LY264_RS15970 WP_003831996.1 3254144..3254758(-) (sxy/tfoX) [Citrobacter portucalensis strain Cf7303]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=657843 LY264_RS15970 WP_003831996.1 3254144..3254758(-) (sxy/tfoX) [Citrobacter portucalensis strain Cf7303]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGTTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTAGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676