Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHV04_RS27630 Genome accession   NZ_CP108268
Coordinates   6188061..6188855 (-) Length   264 a.a.
NCBI ID   WP_072488421.1    Uniprot ID   A0A1K2EW71
Organism   Streptomyces sp. NBC_00046     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6183061..6193855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHV04_RS27615 (OHV04_27610) - 6183207..6184022 (+) 816 WP_405716976.1 GNAT family N-acetyltransferase -
  OHV04_RS27620 (OHV04_27615) - 6184083..6185969 (+) 1887 WP_405716977.1 IucA/IucC family protein -
  OHV04_RS27625 (OHV04_27620) - 6186007..6187977 (+) 1971 WP_405716978.1 ATP-dependent DNA helicase -
  OHV04_RS27630 (OHV04_27625) dinR/lexA 6188061..6188855 (-) 795 WP_072488421.1 transcriptional repressor LexA Regulator
  OHV04_RS27635 (OHV04_27630) nrdR 6189376..6189888 (+) 513 WP_356088048.1 transcriptional regulator NrdR -
  OHV04_RS27640 (OHV04_27635) - 6190049..6192946 (+) 2898 WP_405716979.1 vitamin B12-dependent ribonucleotide reductase -
  OHV04_RS27645 (OHV04_27640) - 6193125..6193568 (+) 444 WP_405716980.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28660.41 Da        Isoelectric Point: 6.9854

>NTDB_id=657829 OHV04_RS27630 WP_072488421.1 6188061..6188855(-) (dinR/lexA) [Streptomyces sp. NBC_00046]
MTTTADSATITAQDRSQSRFEPVHAMNDSVTNMEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=657829 OHV04_RS27630 WP_072488421.1 6188061..6188855(-) (dinR/lexA) [Streptomyces sp. NBC_00046]
GTGACCACCACCGCTGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGATTCGAGCCGGTACATGCCATGAA
TGACTCAGTCACGAACATGGAGGGGCCAGAGCCCGCGCGCCCAGCGCGCTCATTGCCCGGCCGACCTCCTGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGTGGATATCCG
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
GAAGGGCTTTCTGCGCCGCGACCCGCACCGCCCGCGGGCGTACGAGGTCCGCGGCTCGGACCAGCCCAGTTCGCAGCCCA
CGGACACGACCGGCAAGCCCGCGGCGTCGTACGTACCGCTGGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTCTTCCCCCTCCCCCGCCAGCTCGTCGGTGACGGCGAGCTGTTCGTGCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCAGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCGGCCATGCTGGACGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCGGGCGACGAGGCCACGATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1K2EW71

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375