Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LY266_RS16175 Genome accession   NZ_CP092463
Coordinates   3292244..3292858 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain Cf7308     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3287244..3297858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY266_RS16160 (LY266_16160) helD 3287468..3289522 (-) 2055 WP_032948946.1 DNA helicase IV -
  LY266_RS16165 (LY266_16165) - 3289648..3290094 (+) 447 WP_003035892.1 YccF domain-containing protein -
  LY266_RS16170 (LY266_16170) yccS 3290113..3292266 (+) 2154 WP_032941200.1 YccS family putative transporter -
  LY266_RS16175 (LY266_16175) sxy/tfoX 3292244..3292858 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  LY266_RS16180 (LY266_16180) sulA 3293076..3293585 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  LY266_RS16185 (LY266_16185) ompA 3293943..3295001 (+) 1059 WP_003836839.1 porin OmpA -
  LY266_RS16190 (LY266_16190) matP 3295090..3295542 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  LY266_RS16195 (LY266_16195) - 3295728..3297488 (+) 1761 WP_131334055.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=657820 LY266_RS16175 WP_003035889.1 3292244..3292858(-) (sxy/tfoX) [Citrobacter freundii strain Cf7308]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=657820 LY266_RS16175 WP_003035889.1 3292244..3292858(-) (sxy/tfoX) [Citrobacter freundii strain Cf7308]
ATGAAAGAGCTTTCTTATGCACGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACTGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAATGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686