Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   NY40_RS03145 Genome accession   NZ_AP014523
Coordinates   619792..620055 (+) Length   87 a.a.
NCBI ID   WP_000584948.1    Uniprot ID   A0AB72ZTB6
Organism   Helicobacter pylori NY40     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 614792..625055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY40_RS03120 (NY40_0628) groES 615072..615428 (-) 357 WP_041050349.1 co-chaperone GroES -
  NY40_RS03125 (NY40_0629) dnaG 615719..617398 (+) 1680 WP_041050351.1 DNA primase -
  NY40_RS03130 (NY40_0630) - 617395..618447 (+) 1053 WP_041050353.1 MnmA/TRMU family protein -
  NY40_RS03135 (NY40_0631) - 618537..619364 (+) 828 WP_041050355.1 DUF5718 family protein -
  NY40_RS03140 (NY40_0632) comB2 619511..619792 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  NY40_RS03145 (NY40_0633) comB3 619792..620055 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  NY40_RS03150 (NY40_0634) comB4 620057..622420 (+) 2364 WP_041050359.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  NY40_RS03155 (NY40_0635) - 622725..624065 (+) 1341 WP_041050361.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9992.05 Da        Isoelectric Point: 9.5290

>NTDB_id=65782 NY40_RS03145 WP_000584948.1 619792..620055(+) (comB3) [Helicobacter pylori NY40]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=65782 NY40_RS03145 WP_000584948.1 619792..620055(+) (comB3) [Helicobacter pylori NY40]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCACCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment