Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   NY40_RS03140 Genome accession   NZ_AP014523
Coordinates   619511..619792 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori NY40     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 614511..624792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY40_RS03120 (NY40_0628) groES 615072..615428 (-) 357 WP_041050349.1 co-chaperone GroES -
  NY40_RS03125 (NY40_0629) dnaG 615719..617398 (+) 1680 WP_041050351.1 DNA primase -
  NY40_RS03130 (NY40_0630) - 617395..618447 (+) 1053 WP_041050353.1 MnmA/TRMU family protein -
  NY40_RS03135 (NY40_0631) - 618537..619364 (+) 828 WP_041050355.1 DUF5718 family protein -
  NY40_RS03140 (NY40_0632) comB2 619511..619792 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  NY40_RS03145 (NY40_0633) comB3 619792..620055 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  NY40_RS03150 (NY40_0634) comB4 620057..622420 (+) 2364 WP_041050359.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  NY40_RS03155 (NY40_0635) - 622725..624065 (+) 1341 WP_041050361.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=65781 NY40_RS03140 WP_001272690.1 619511..619792(+) (comB2) [Helicobacter pylori NY40]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=65781 NY40_RS03140 WP_001272690.1 619511..619792(+) (comB2) [Helicobacter pylori NY40]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATCTTATTCACGATTCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment