Detailed information
Bioinformatically predicted
Overview
| Name | comH | Type | Machinery gene |
| Locus tag | NY40_RS02490 | Genome accession | NZ_AP014523 |
| Coordinates | 494561..496000 (-) | Length | 479 a.a. |
| NCBI ID | WP_041050182.1 | Uniprot ID | A0A060PPW2 |
| Organism | Helicobacter pylori NY40 | ||
| Function | import of DNA into the periplasm (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 489561..501000
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NY40_RS02465 (NY40_0495) | recG | 490690..492555 (-) | 1866 | WP_041050173.1 | ATP-dependent DNA helicase RecG | - |
| NY40_RS02470 (NY40_0496) | - | 492637..492993 (+) | 357 | WP_041050176.1 | hypothetical protein | - |
| NY40_RS02475 (NY40_0497) | - | 492997..493632 (+) | 636 | WP_000765633.1 | outer membrane protein | - |
| NY40_RS02480 (NY40_0498) | - | 493629..494381 (-) | 753 | WP_041050180.1 | exodeoxyribonuclease III | - |
| NY40_RS02490 (NY40_0500) | comH | 494561..496000 (-) | 1440 | WP_041050182.1 | hypothetical protein | Machinery gene |
| NY40_RS02495 (NY40_0501) | dnaA | 496228..497601 (-) | 1374 | WP_041050184.1 | chromosomal replication initiator protein DnaA | - |
| NY40_RS02500 (NY40_0502) | - | 497754..498296 (+) | 543 | WP_041050186.1 | purine-nucleoside phosphorylase | - |
| NY40_RS02505 (NY40_0503) | - | 498339..498578 (+) | 240 | WP_000461837.1 | DUF2443 domain-containing protein | - |
| NY40_RS02510 (NY40_0504) | glmS | 498579..500372 (+) | 1794 | WP_041050188.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
Sequence
Protein
Download Length: 479 a.a. Molecular weight: 54972.78 Da Isoelectric Point: 6.7223
>NTDB_id=65780 NY40_RS02490 WP_041050182.1 494561..496000(-) (comH) [Helicobacter pylori NY40]
MKKSLCLSFFLTFSNSLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTTIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPL
ITHSKTNPTNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADTDENNESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQIEPTFYETSELAYYSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV
MKKSLCLSFFLTFSNSLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTTIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEAHAHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPL
ITHSKTNPTNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADTDENNESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQIEPTFYETSELAYYSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV
Nucleotide
Download Length: 1440 bp
>NTDB_id=65780 NY40_RS02490 WP_041050182.1 494561..496000(-) (comH) [Helicobacter pylori NY40]
ATGAAAAAATCCCTTTGTCTTTCTTTCTTTCTGACCTTCTCCAACTCTCTTCAAGCCCTTGTCATTGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCCAGACAAGTTTTGGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTACAATCGTCTATCAACCCCTTGATGAA
AAACTCTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCACACGCACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCTAGTTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
ATAACTCATAGCAAAACAAACCCCACTAACGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATACTG
ATGAAAACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCCAATGTTAAAGAATTTGCA
TGCGGGAAGTGGGTTTATGACGATGAAAACTTGCAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAGTGTAAAAGGGCTAGAGCGAGAAAAGACGGCACAACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTATATGAACGCCCCAAACAAGACGATC
AAATAGAGCCAACTTTTTATGAAACCAGCGAATTGGCTTATTATTCCACACGAAAAAGCGAAATAACGCACAACGAATTG
AACTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAGCGA
ATACAAGGAATGGGTTAAAAACCATGTGCGTTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA
ATGAAAAAATCCCTTTGTCTTTCTTTCTTTCTGACCTTCTCCAACTCTCTTCAAGCCCTTGTCATTGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCCAGACAAGTTTTGGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTACAATCGTCTATCAACCCCTTGATGAA
AAACTCTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGCACACGCACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCTAGTTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
ATAACTCATAGCAAAACAAACCCCACTAACGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATACTG
ATGAAAACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCCAATGTTAAAGAATTTGCA
TGCGGGAAGTGGGTTTATGACGATGAAAACTTGCAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACAGAAAAGTGTAAAAGGGCTAGAGCGAGAAAAGACGGCACAACTAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTATATGAACGCCCCAAACAAGACGATC
AAATAGAGCCAACTTTTTATGAAACCAGCGAATTGGCTTATTATTCCACACGAAAAAGCGAAATAACGCACAACGAATTG
AACTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAGCGA
ATACAAGGAATGGGTTAAAAACCATGTGCGTTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTGGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comH | Helicobacter pylori 26695 |
94.572 |
100 |
0.946 |